Protein Alignment SoxN and tfam

DIOPT Version :10

• Sequence 1: NP_001260269.1
• Gene: SoxN / 44275
• FlyBaseID: FBgn0029123
• Length: 761
• Species: Drosophila melanogaster
• Sequence 2: XP_002937148.2
• Gene: tfam / 100135718
• XenbaseID: XB-GENE-978256
• Length: 281
• Species: Xenopus tropicalis
• Alignment Length: 173
• Identity: 35/173 - (20%)
• Similarity: 69/173 - (39%)
• Gaps: 41/173 - (23%)

  Fly   147 GAGSALSSLTGGSSNNNNNSATA---------------NKNQQHADRVKRPMNAFMVWSRGQRRK 196
            |.|..|.||.|.:|:......:.               :|....::..|||:.|::.:|..||.|
 Frog     8 GVGGLLRSLAGINSSQAARCTSVSSGILGLQCSPFRWFSKGATSSEYPKRPLTAYLRYSIEQRPK 72

  Fly   197 MASDNPKMHNSEISKRLGAQWKDLSESEK-----------RPFIDEAK----RLRAVHMKEHPDY 246
            :....|:....:::|.:..:||.|..:||           :.:.:|.|    :|..:.::.|.:.
 Frog    73 LHKQYPEAKMMDLTKIIALEWKGLPSAEKERYEVVANAEQKKYREEVKQYREKLSPMQLELHREQ 137

  Fly   247 KYRPRRKTKTLTKTKEKYPMGGLMPGQTVGGGAPGEPVTPTRV 289
            :.:...|.|::.|.:|...:           |.|..|.:|..:
 Frog   138 RRQRLAKRKSVRKKRELTVL-----------GRPKRPRSPFNI 169

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SoxN	NP_001260269.1	HMG-box_SoxB	177..252	CDD:438790	19/89 (21%)
tfam	XP_002937148.2	HMG-box_SF	55..123	CDD:469606	17/67 (25%)
		HMG-box_TFAM_rpt2	140..239	CDD:438803	8/41 (20%)