DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msn and tnikb

DIOPT Version :10

Sequence 1:NP_524679.3 Gene:msn / 44030 FlyBaseID:FBgn0010909 Length:1504 Species:Drosophila melanogaster
Sequence 2:XP_005162835.2 Gene:tnikb / 556959 ZFINID:ZDB-GENE-051113-320 Length:1439 Species:Danio rerio


Alignment Length:1621 Identity:695/1621 - (42%)
Similarity:900/1621 - (55%) Gaps:322/1621 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SLDDIDLTALKDPAGIFELIEVVGNGTYGQVYKGRHTKTGQLAAIKVMDVTEDEEEEIKLEINVL 80
            |||:|||:||:||||||||:|:||||||||||||||.||||||||||||||.|||||||.|||:|
Zfish     9 SLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKAEINML 73

  Fly    81 KKYSNHRNIATYYGAFIKKSPPGKDDQLWLVMEYCGAGSVTDLVKSTKGQSLKEEWIAYICREIL 145
            ||||:||||||||||||||:|||.|||||||||:|||||||||:|:|||.||||||.||||||||
Zfish    74 KKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNSLKEEWTAYICREIL 138

  Fly   146 RGLSYLHSNKVIHRDIKGQNVLLTDNAEVKLVDFGVSAQLDRTIGRRNTFIGTPYWMAPEVIACD 210
            |||::||.:|||||||||||||||:||||||||||||||||||:|||||||||||||||||||||
Zfish   139 RGLTHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACD 203

  Fly   211 ENPDATYDNRSDLWSLGITALEMAESQPPLCDLHPMRALFLIPRNSPPRLKSKKWSKKFHGFIDT 275
            ||||||||.:||||||||||:||||..|||||:||||||||||||..||||||||||||..||::
Zfish   204 ENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIES 268

  Fly   276 VLVKDYHQRPYTENLLKHGFIKDQPTDRQVRIQLKDHIDRCKKRKQEKEREDYRYSGSDNDDDEP 340
            .|||:::|||.||.|:||.||||.|.:|||||||||||||.||::.|::..:|.||||:.:::|.
Zfish   269 CLVKNHNQRPSTEQLIKHPFIKDLPNERQVRIQLKDHIDRTKKKRGERDETEYEYSGSEEEEEER 333

  Fly   341 QLAGEHSSIVQAPGGDTLRRNFQQIQ---EGRLAAEQQQQHHLMAQAQAQAAAAHAAAQAQAQLQ 402
            .: ||.|||:..||..||||:|.::|   :.|..|.::||   :.|.|.:.......|:.|.:::
Zfish   334 DI-GEPSSIINIPGESTLRRDFLRLQLANKERSEALRRQQ---LEQQQNEEHKRQLLAERQKRIE 394

  Fly   403 QQQQQAAAAAAAAAHAAQQAQQAAQQAQAQQPQANRQPKPPSRQQVEEPGPPARPPQRLIVVPDP 467
            :|::|               ::..::.|.::.:..:|.:...|::.||.....|..:|.....:.
Zfish   395 EQKEQ---------------RRRLEEQQRRERELRKQQEREQRRRYEEMEQLRREEERRHAEREQ 444

  Fly   468 PHANRPLPPTPKCGEPAGQTPQQQQ----RNSQNNFKPSLPPRRPEPQPQTAAGGQGSQQQAQPE 528
            .:..|.|....:..|...|...|:|    ...:...:......|.:.|.|.......|.||.|.|
Zfish   445 EYIRRQLEEEQRQLEILQQQLLQEQALLLEYKRKQLEEQRQAERLQRQLQQERAYLVSLQQQQQE 509

  Fly   529 APPRNNRQSSGLSSSGGSASGGGGSSKPAAALPQQSNNHLGQPVNPLDPLDSSDSDSEPDEPNDR 593
            ..|.:.:|.                            .|....|||      ||..:...|..:|
Zfish   510 PRPADKKQL----------------------------YHYKDSVNP------SDKPAWAKEVMER 540

  Fly   594 ARNDGTLLASDPPKP-----LPGLGPVSEDANTTTPLSHGSGGPPNRPL-PPTPDDDDQAGDRTL 652
            |:::...:   |||.     .||      |......|:|.. .|.|:|. ||:......:     
Zfish   541 AQSNSPRI---PPKKHHSFNSPG------DKRVGQFLAHDQ-NPSNQPTRPPSYPASSHS----- 590

  Fly   653 IMKRKLEQNINRLQKSASTSQANVTPSRRGDESNLLRDWDFDRFFPKNANGPRGSGRGSPTTTAS 717
               |:::....:|:..:..:...:..|...|.|.|.|  ...:...:.:.|...|.:|     |.
Zfish   591 ---REMDLAEPQLRIVSGPNVPRIRVSCEPDPSQLAR--MVQQHLEQESRGHNRSSKG-----AE 645

  Fly   718 LSRSSQLSTLKVDTKLQRAS-------VAEAITRP--VPR-------GYQPLK-------AEPSA 759
            :.|...:|.::..:||.|.|       ||..|:.|  .||       |.|..:       .||..
Zfish   646 IERDLYVSKVEERSKLNRQSSPALQHKVANRISDPSLPPRSESFSSGGIQQARTPPMHRSVEPQM 710

  Fly   760 SQSIA-KEQGSA-SGSGS----GSGSASGSGSGGSTNSPAHKRQDSD---------SRLPTNFER 809
            :..:: |..||: :||.|    .|...|....|.|.:.|...||:||         .|:.:..:|
Zfish   711 AHLVSVKSHGSSMTGSQSLHDQSSQGVSAFQEGLSPHRPPMPRQNSDPTSETPAPPPRITSRDDR 775

  Fly   810 G--FRRE----------NSDFFPLAKRYSAVFSGASASGSTAGS------------PSAQALQRS 850
            |  .|:|          .:...|...|.::..:|....|...|:            |...:|||:
Zfish   776 GSWLRQEEDVPPKVPQRTTSISPALVRKNSPGNGPGGLGPRTGAHLIRASNPDLRIPVEPSLQRT 840

  Fly   851 SAVYQRNSIYSSSISSKSKENDVPGAPGAAAAGTATASAKPGPAAATTTATKGAAPKTSKSLANF 915
            |:....:|...||....|:.|.:.|            |.||..:.|.:     ..||......|.
Zfish   841 SSGSSSSSSTPSSQGGSSERNRLGG------------SNKPEGSPAVS-----QEPKAKTQEENR 888

  Fly   916 HFLRPRREKTESVIVLQNAAVRAQRLQQLQQQQQ-----------QQQLQQQQQQQNRGGGGGGG 969
            ...||.|....:.:        |:.|::|:..:.           ....:..:..:...|.||..
Zfish   889 EVTRPSRPADLTAL--------AKELRELRTNEDTNRPPRKVTEYSSSSEDSESSEEEDGEGGAH 945

  Fly   970 GG-------------GGGGGSSGVG---------------ADGTGL----------------GTP 990
            .|             .|.||:..:|               .|.|.:                |.|
Zfish   946 DGTVPVSDIPRIMPSAGQGGTDSLGNQEDSHSNDSFGKNSQDSTLMMRETFGERKLGHAESNGFP 1010

  Fly   991 GTRTSSVLPDLLSQA-SPATPPRHDKSSSEEYQAAISSSVHSTPSKSFIASSGSGGLGLGGGTVV 1054
            |   ||.||||:.|: |||..|....|:.:                  :.|....|:|       
Zfish  1011 G---SSNLPDLVQQSHSPAEGPGRQSSALD------------------LDSVAEFGMG------- 1047

  Fly  1055 GGVIISSNHSPQSTISLASSSSNSRQNSPKNSISKTRSSSSITN-LLHKSASSSSANLHHLTPCS 1118
                 .::.:|       .......|.||........:|:...: ||.:......|.|:.     
Zfish  1048 -----KASFTP-------FVDPRVYQTSPTEDDEDNPASALFADELLRQEQEQEQARLNE----- 1095

  Fly  1119 STSSASISNPLPPHAYALQQKQRSFLTFGFGAGGSGPSRRESHVNVNVTPTSHEAANDTPEIRKY 1183
                                                 :|:.|.||||  ||:....:||||||||
Zfish  1096 -------------------------------------ARKISVVNVN--PTNIRPHSDTPEIRKY 1121

  Fly  1184 KKRFNSEILCAALWGVNLLIGTENGLMLLDRSGQGKVYQLISRRRFQQMEVLEGQNILVTISGKK 1248
            |||||||||||||||||||:||||||||||||||||||.||:|||||||:||||.|:||||||||
Zfish  1122 KKRFNSEILCAALWGVNLLVGTENGLMLLDRSGQGKVYNLINRRRFQQMDVLEGLNVLVTISGKK 1186

  Fly  1249 NRVRVYYLSWLKSKILRTDGLSDQVERRNGWINVGDLQGAVHFKIVKYERIKFLVIALKDSIEIY 1313
            |::||||||||:::||..|   .:||::.|||.||||:|.||:|:||||||||||||||:::|||
Zfish  1187 NKLRVYYLSWLRNRILHND---PEVEKKQGWITVGDLEGCVHYKVVKYERIKFLVIALKNAVEIY 1248

  Fly  1314 AWAPKPYHKFMAFKNFGELEHRPLLVDLTIEDQSRLKVIYGSAEGFHAVDLDSAEVYDIYLPKHT 1378
            ||||||||||||||:|.:|:|:|||||||:|:..||||||||:.|||.:|:||...||||:|.|.
Zfish  1249 AWAPKPYHKFMAFKSFTDLQHKPLLVDLTVEEGQRLKVIYGSSVGFHVIDVDSGNPYDIYIPSHI 1313

  Fly  1379 QGAIIPHCIVALPNSNGMQLLLCYDNEGVYVNTVGRVSKNIVLQWGEMPTSVAYIGTGQIMGWGN 1443
            ||::.||.||.||.::||::||||::|||||||.||::|::||||||||||||||.:.||||||.
Zfish  1314 QGSVTPHAIVVLPKTDGMEMLLCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIHSNQIMGWGE 1378

  Fly  1444 KAIEIRSVESGHLDGVFMHKKAQRLKFLCERNDKVFFSSAKGASSCQIYFMTLNKPGMANW 1504
            |||||||||:||||||||||:|||||||.||||||||:|.:...|.|::|||||:..|.||
Zfish  1379 KAIEIRSVETGHLDGVFMHKRAQRLKFLSERNDKVFFASVRSGGSSQVFFMTLNRNSMMNW 1439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msnNP_524679.3 STKc_myosinIII_N_like 25..296 CDD:270785 229/270 (85%)
CNH 1183..1484 CDD:214481 226/300 (75%)
tnikbXP_005162835.2 None

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