DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED20 and med20

DIOPT Version :10

Sequence 1:NP_001260223.1 Gene:MED20 / 43952 FlyBaseID:FBgn0013531 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_593728.2 Gene:med20 / 2542421 PomBaseID:SPAC17G8.05 Length:193 Species:Schizosaccharomyces pombe


Alignment Length:185 Identity:38/185 - (20%)
Similarity:76/185 - (41%) Gaps:32/185 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ATHAGQFLVDCETFISTPQPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLM 97
            |.|..:::|..:.:      .|....:.:..|..:..| |..:.:|..|    .|.|:...:.::
pombe    31 AQHLKKWVVQYKLY------RNAVTPKTLEFLKQNINP-SMLACVDEAT----MIDAEPELEDII 84

  Fly    98 LKMTNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCVILAYCWEMIRE- 161
            :: |..:..::...||  |:.:|.|.|.:.:.:|.....:||||..:.|.....:.....:|:| 
pombe    85 VR-TKLWNFRQSFTIE--GSIYEVGSFKVAIANVLQKSVWKGILFHVTYDGTESVDLARPIIQEF 146

  Fly   162 MLQGFL--GIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDIF-----EPMDTVKQ 209
            .|:.||  ..:|...:.|:|          .|..|:..:.:.     :.:|||.|
pombe   147 FLKCFLQNNKSVTPVYESFF----------NQPRHSLDSKLLLQLFKQRIDTVSQ 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED20NP_001260223.1 Med20 1..215 CDD:400779 38/185 (21%)
med20NP_593728.2 Med20 1..180 CDD:400779 34/172 (20%)

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