DRSC/TRiP Functional Genomics Resources

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Protein Alignment: MED20 and med20

Sequence 1:NP_001260223.1 Gene:MED20 FlyBaseID:FBgn0013531 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_593728.2 Gene:med20 PomBaseID:SPAC17G8.05 Length:193 Species:Schizosaccharomyces pombe

Alignment Length:185 Identity:38/186 (20%)
Similarity:76/186 (41%) Gaps:32/186 (17%)


  Fly    33 ATHAGQFLVDCETFISTPQPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLM 97
            |.|..:::|..:.:      .|....:.:..|..:..| |..:.:|..|    .|.|:...:.::
pombe    31 AQHLKKWVVQYKLY------RNAVTPKTLEFLKQNINP-SMLACVDEAT----MIDAEPELEDII 84

  Fly    98 LKMTNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCVILAYCWEMIRE- 161
            :: |..:..::...||  |:.:|.|.|.:.:.:|.....:||||..:.|.....:.....:|:| 
pombe    85 VR-TKLWNFRQSFTIE--GSIYEVGSFKVAIANVLQKSVWKGILFHVTYDGTESVDLARPIIQEF 146

  Fly   162 MLQGFL--GIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDIF-----EPMDTVKQ 209
            .|:.||  ..:|...:.|:|          .|..|:..:.:.     :.:|||.|
pombe   147 FLKCFLQNNKSVTPVYESFF----------NQPRHSLDSKLLLQLFKQRIDTVSQ 191

Known Domains:


GeneSequenceDomainRegion External IDIdentity
MED20NP_001260223.1 Med20 1..215 CDD:285776 38/186 (20%)
med20NP_593728.2 Med20 25..180 CDD:312207 34/173 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 LDO PTHR12465
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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