DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: MED20 and Usp49

Sequence 1:NP_001260223.1 Gene:MED20 FlyBaseID:FBgn0013531 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_940813.1 Gene:Usp49 MGIID:2685391 Length:685 Species:Mus musculus

Alignment Length:90 Identity:23/91 (25%)
Similarity:37/91 (41%) Gaps:16/91 (18%)


  Fly   186 TAMGQQQLHAKHNDIFEPMDTVKQYLEQFTNYRKHV--TLMGGMGSGPGSQQV-------GPNVH 241
            ::.|:.||..:..:  |.::..|:...|   .|:.|  .|:..:.|.|..:..       || |.
Mouse   162 SSRGRAQLEQRRQE--EALERKKEAARQ---RRREVKRRLLEELASAPPRKSARLLLHAPGP-VA 220

  Fly   242 MSPAVAGLHRSXSADVKLEPPDEPA 266
            :.||.....|. || ..|.|..:||
Mouse   221 VRPATLATSRRLSA-AALNPRRQPA 244

Known Domains:


GeneSequenceDomainRegion External IDIdentity
MED20NP_001260223.1 Med20 1..215 CDD:285776 6/29 (21%)
Usp49NP_940813.1 zf-UBP 26..87 CDD:280334
UCH 249..651 CDD:278850
Peptidase_C19 251..652 CDD:271592
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C229169800
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 1 0.960
21.890

Return to query results.
Submit another query.