DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and NetB

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_511155.1 Gene:NetB / 32400 FlyBaseID:FBgn0015774 Length:793 Species:Drosophila melanogaster


Alignment Length:595 Identity:130/595 - (21%)
Similarity:195/595 - (32%) Gaps:202/595 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 GGGALRLLKTEDVYSSSFSGGLYPPLFNVVPRAQISVNATCGQNGAEEYCKQVGAKPCGICNAHS 196
            |..|..:...:..|.........|...|......:..::.||....|.||:.:.....|.|.:..
  Fly    22 GSSAAGISSNDPCYFEGKPRKCLPSFVNAAYGNPVQASSVCGAQQPERYCELLRDGNAGECRSCE 86

  Fly   197 SDRAKQRSIQSLISSGSGSGSGSGFEEGWWQS-----PTLQGGRQFEYVTILLDLKQTFQIFSVW 256
            ..|....::..|.:..:.:         .|:|     |........:.||:.|.|.:.:::..:.
  Fly    87 QQRYGPAALTDLNNPSNVT---------CWRSGAVNVPHDPDSAPPDNVTLTLSLGKKYELTYIS 142

  Fly   257 LK-SANSPRPASWILEKSLD-GINFEPWQYFGLSDADCQRRWNLSGQNGKYVFQNDTEIIC-STQ 318
            |. ...||||.|..:.||.| |..::|:|::   .:.||:.:. .....|....|:.|..| ::|
  Fly   143 LSFCPRSPRPDSLAIFKSSDFGQTWQPFQFY---SSQCQKFYG-RPDRAKISKFNEQEARCINSQ 203

  Fly   319 FSKPGPLENGVLHASLLKNRPGAT--DQSPELMKFITTRYIRIRLQGMH--------STAN---- 369
            ....|..:....:.  |:.||.|.  |.|..|..::|...||:....:.        ..||    
  Fly   204 HDTGGAAQRFAFNT--LEGRPSANDLDSSLVLQDWVTATDIRVVFHRLELPPQLLKVKNANAFSD 266

  Fly   370 -----------------------------QDNS------------------------LDWLLDSP 381
                                         |||.                        ||:..|..
  Fly   267 EMGGSREEDEDDDADLELDGEQDEYDYNLQDNDSADAGYDEYEEPKKHLELDDDHLHLDYASDGE 331

  Fly   382 SL------------EKH-------------------------------------------SFYSL 391
            |:            |||                                           ..|::
  Fly   332 SVVKRQGKHKGSAYEKHYQSKLAATTPPQQPPKVTPPGKVTPPSTAAPSAAASAVTLPISQHYAV 396

  Fly   392 SQLKVSARLDCNGHAN--------------------RSHESPDDP----------------LMQC 420
            |...|..|..|||||:                    :..::|..|                .|.|
  Fly   397 SDFAVGGRCKCNGHASECVATVSSGSGTALSDQDDGQDEDTPSAPSLANHFGRSTQMSAKLTMTC 461

  Fly   421 ICQHNTCGAQCEQCCPLFQDRPY-----QMGGECEICQCYGHAESCTYDPFLDK-------GICQ 473
            .|:|||.|.:||:|.|.:.|||:     ....||::|||.|||..|.::..|.|       |:|.
  Fly   462 ACKHNTAGPECERCKPFYFDRPWGRATDNDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCY 526

  Fly   474 SCSNNTAGIECEFCEMGFYRELDAPLTDP-----CLPCSCNPARSTG-GCQSDGGSCNCLEGFQG 532
            :|.::|.|..|.:|..|:||:...|   |     |..|.|:|..||| .|....|.|.|.||..|
  Fly   527 NCQHDTTGRYCHYCREGYYRDATKP---PNHRKVCKRCDCHPVGSTGKTCNHLSGQCPCKEGVTG 588

  Fly   533 KNCEECAPGY 542
            ..|..||.||
  Fly   589 LTCNRCARGY 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653 63/374 (17%)
EGF_Lam 401..450 CDD:238012 22/89 (25%)
EGF_Lam 505..552 CDD:238012 18/39 (46%)
Laminin_EGF 550..597 CDD:395007
Laminin_B 660..813 CDD:459652
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:395007
Laminin_EGF 974..1018 CDD:395007
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:395007
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:395007
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:395007
Laminin_EGF 1340..1392 CDD:395007
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
NetBNP_511155.1 LamNT 37..261 CDD:214532 48/238 (20%)
EGF_Lam <458..484 CDD:238012 13/25 (52%)
EGF_Lam 498..555 CDD:238012 21/59 (36%)
EGF_Lam 560..608 CDD:238012 18/39 (46%)
NTR_netrin-1_like 661..791 CDD:239634
Blue background indicates that the domain is not in the aligned region.

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