Protein Alignment sbr and ssp2

DIOPT Version :10

• Sequence 1: NP_524660.1
• Gene: sbr / 43944
• FlyBaseID: FBgn0003321
• Length: 672
• Species: Drosophila melanogaster
• Sequence 2: NP_648672.1
• Gene: ssp2 / 39540
• FlyBaseID: FBgn0036389
• Length: 982
• Species: Drosophila melanogaster
• Alignment Length: 511
• Identity: 104/511 - (20%)
• Similarity: 180/511 - (35%)
• Gaps: 140/511 - (27%)

  Fly   173 NGHLPDGYRLMPRVRSGIPLVAIDDAFKEKMKVTMAKRYN------IQTKALDLSRFHADPD--L 229
            |.:...||....:.|..:.|..|..|..:|...|...|.|      .:|...:..:|..|..  |
  Fly   367 NNNNKAGYTPTLKGRGDMNLSPIVGATPQKPTGTAPGRLNNTFEPVAKTAPFNGEKFVLDTMELL 431

  Fly   230 KQVFCPL---FRQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVEKRLPNLKILYLGDNK 291
            :|:..||   :...:......:.|  :.||....:      .|.|.:|.|::..|:
  Fly   432 EQIEQPLDGTYNLQMSEQHRQMQC--VMDLAEAEV------EMLAQQGDEEQFENM--------- 479

  Fly   292 IPSLAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQITFDLSEQ 356
               ||.|..:..|:..:|.:            |:.:..::|:|.: .:.:.|..|.::....:|:
  Fly   480 ---LAELGKVNTLNEEQLKM------------QKSLDTIKRRFHR-DEAEAEEREEELQQSAAEK 528

  Fly   357 ---GRLLETKASYLCDVAGAEVVRQFLDQYFRIFDSGNRQALLDAYHEKAMLSISMPSASQAGRL 418
               ..|.::.:|......|.|   :.|.:..|::|..|    |.|.|.....|.|..||
  Fly   529 VDTPVLNQSHSSSNSSGGGGE---RLLSRRSRLYDDVN----LSAMHGSNGSSTSTNSA------ 580

  Fly   419 NSFWKFNRNLRRLLNGEENRTRNLKYGRLACVSTLDEWPKTQ-----------------HDRRTF 466
             ||....|::.::.....:..          ....:|.||:|                 .||..|
  Fly   581 -SFIVQRRDMPQVEQPAPDPD----------PEPAEEPPKSQVTAEIDPASYKLPERRERDRDRF 634

  Fly   467 TVDLTIYNTSMMVFTVTGLFKELNDETNNPASME------LYDVRHFARTYVVVPQNNG-----F 520
            .   ||..:..|......:...::||   |..:|      :.|||:      ...|..|     .
  Fly   635 K---TIKISKEMRLQPEIIVPCIDDE---PQQLEDEQKQLVEDVRY------EEDQRQGSPPGRL 687

  Fly   521 CIRNETIFITN---------ATHEQVRE----FKRSQHQPAP-GAMPSTSSAVTSPQAGA----A 567
            ..|::|..|:|         .|:::.:|    .:|.|.|.|| .|.|:.:|.:..|::.:    .
  Fly   688 SRRDQTTAISNNADASASNYLTYKKPKEKSLIQRRPQQQEAPLLAEPAPASTLPQPRSLSRPRYI 752

  Fly   568 AGLQGRLNALGVATGPVAILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQM 623
            :||| :...:..||...|.|:..|          :||:.||...|...:...|..|
  Fly   753 SGLQ-KFTTVSKATSAGAGLNATP----------AAAMPTTVTVPANGNGELKSPM 797

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
sbr	NP_524660.1	Tap-RNA_bind	113..191	CDD:462696	4/17 (24%)
		leucine-rich repeat	215..255	CDD:275382	8/44 (18%)
		LRR	<252..>315	CDD:443914	12/62 (19%)
		leucine-rich repeat	256..281	CDD:275382	5/24 (21%)
		leucine-rich repeat	282..305	CDD:275382	3/22 (14%)
		leucine-rich repeat	306..336	CDD:275382	4/29 (14%)
		NTF2	372..531	CDD:238403	38/186 (20%)
		flgK	<548..>613	CDD:235895	18/69 (26%)
		TAP_C	609..671	CDD:197882	3/15 (20%)
ssp2	NP_648672.1	PHA03247	<676..965	CDD:223021	32/133 (24%)