DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and chrnb3a

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_957514.1 Gene:chrnb3a / 794401 ZFINID:ZDB-GENE-040108-1 Length:467 Species:Danio rerio


Alignment Length:392 Identity:76/392 - (19%)
Similarity:139/392 - (35%) Gaps:103/392 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 FDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLA-YEQTSSLLQTRMH 262
            |.||...:.|::           |.|          :..::.|..:...|. .::.:.|:.|.:.
Zfish    40 FRGYQKWVRPVL-----------HAN----------DTITVRFGLKISQLVDVDEKNQLMTTNVW 83

  Fly   263 MMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNV-------LNGALQSMGQVLQSYELMVYA 320
            :...|.|.:|.|.|||:|.:.|...|...||.|.:.:       ..|:|.:        :.:|..
Zfish    84 LWEEWTDYKLRWNPEDYGGITSIRVPSETIWLPDIVLYENADGRFEGSLMT--------KAIVRF 140

  Fly   321 NGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNT 385
            ||:| ::.......|.|......:|.:|..|.::.|                             
Zfish   141 NGTI-MWTPPASYKSACTMDVTFFPFDRQNCSMKFG----------------------------- 175

  Fly   386 PSGWSF--TQMSVVLVENDSQRR---YNPKGMMQKMTGD-------------VAIEFTLQRNRSF 432
              .|::  |.:.:.||:....|:   .|.:..:...||.             :...|.|:|...|
Zfish   176 --SWTYDGTMVDLTLVDAYVDRKDFFDNGEWEILNATGQRGSRRDGIYSYPYLTYSFILKRLPLF 238

  Fly   433 YMTVFYLPLIACQMFLILSFVLRSTRRSSL-----ILIALLIAAWGLMYMTRYASPHYVPPMMTA 492
            |.....:|.:......:|.|.|.|.....|     :|::|.:  :.|:......|...|.|::..
Zfish   239 YTLFLIIPCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLTV--FLLVIEEIIPSSSKVIPLIGE 301

  Fly   493 YKV-IMMTTTYCYILHICIIWLD-----LYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYCD 551
            |.: ||:..|:..|:.:.:|.:.     .|.|  .|| |:..:....:.|.:.....:|...|.|
Zfish   302 YLLFIMIFVTFSIIVTVFVINVHHRSSATYHP--MAP-WVKSLFLQRLPRLLCMRGHTDRYQYPD 363

  Fly   552 IQ 553
            |:
Zfish   364 IE 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 41/242 (17%)
chrnb3aNP_957514.1 LIC 9..459 CDD:455710 76/392 (19%)
Blue background indicates that the domain is not in the aligned region.

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