DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and Chrna9

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_075219.1 Gene:Chrna9 RGDID:621534 Length:479 Species:Rattus norvegicus

Alignment Length:395 Identity:84/396 (21%)
Similarity:145/396 (37%) Gaps:79/396 (20%)


  Fly   187 GSNTARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYE 251
            |....:.|.|. |:.|.|.:.|:    ..|:.:|        |.::...||.|.        ..:
  Rat    28 GKYAQKLFSDL-FEDYSSALRPV----EDTDAVL--------NVTLQVTLSQIK--------DMD 71

  Fly   252 QTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYEL 316
            :.:.:|...:.:...|.|:.|.|..:.:..|:|...|...:|:|.:.:.|.|.....:.:.:..:
  Rat    72 ERNQILTAYLWIRQTWHDAYLTWDRDQYDRLDSIRIPSDLVWRPDIVLYNKADDESSEPVNTNVV 136

  Fly   317 MVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELG---LNGQEGQENVALIYDDQRKPIA 378
            :.| :|.||..:..:..:| ||.....:|.:...|::..|   .||.:.....||...|....|.
  Rat   137 LRY-DGLITWDSPAITKSS-CVVDVTYFPFDSQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIE 199

  Fly   379 PNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIA 443
            ..|       |....|..|       :.....|...:...||.....|:|..|||:....:|.:.
  Rat   200 DVE-------WEVHGMPAV-------KNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVL 250

  Fly   444 CQMFLILSFVL--RSTRRSSL-ILIALLIAAWGLMYMTRYASPHYVPPMMTAYKVIMMTTTYCYI 505
            ......|||.|  .|..:.|| :.|.|.:..:.||          |..:|.|.:.:.:...| ||
  Rat   251 ISFLAPLSFYLPAASGEKVSLGVTILLAMTVFQLM----------VAEIMPASENVPLIGKY-YI 304

  Fly   506 LHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYCDIQENPWHHMAK--ILNNLS 568
            ..:.:|        :.:....:.|:|.:               :|..:..|..|.||  ||..:|
  Rat   305 ATMALI--------TASTALTIMVMNIH---------------FCGAEARPVPHWAKVVILKYMS 346

  Fly   569 SILVI 573
            .||.:
  Rat   347 RILFV 351

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052 1/4 (25%)
Neur_chan_LBD 212..429 CDD:280998 43/220 (20%)
Chrna9NP_075219.1 LIC 8..474 CDD:273305 84/396 (21%)
Neur_chan_LBD 31..236 CDD:280998 49/242 (20%)
Neur_chan_memb 244..474 CDD:280999 31/143 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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