DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and lgc-24

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001123110.2 Gene:lgc-24 WormBaseID:WBGene00045385 Length:389 Species:Caenorhabditis elegans

Alignment Length:285 Identity:56/286 (20%)
Similarity:102/286 (36%) Gaps:73/286 (26%)


  Fly   211 KEETKTEKLLSHLNIQAENASMPANLS---------SISF-HFQTRSLAYEQTSSLLQTRMHMMM 265
            |..|...||.|.| .:..|.|||....         .:.| ||      .:.....:...::..:
 Worm    23 KSFTVLTKLRSDL-FKNYNGSMPVGKGEYLEATPSLEVGFIHF------IDDDHGFMSVVINAEL 80

  Fly   266 HWRDSRLVWKPEDFGSL-----ESFE-HPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYAN--- 321
            .|.|.||.|.|.::..:     ::|| ..|...|.|.:.     .:|..:.....:|:.:::   
 Worm    81 TWIDERLKWNPANYSGVREIVEKTFEFRKDNNCWMPIVK-----YRSYDRRYSELDLLEFSDART 140

  Fly   322 -----GSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNE 381
                 |.|....|.: :.:.|..|...:|::...|.|.|..|     :|.     |:.:.::||.
 Worm   141 LISYKGEIKTALQTM-VTTKCQFSFGEYPNDYQNCSIMLIPN-----QNA-----DEFRFVSPNG 194

  Fly   382 HVNTPSGWSFTQMSVVL-------VENDSQRRY-NPKGMMQKMTGDVAIEFTLQRNRSFYMTVFY 438
            :.| |...:....:|.:       ||::....: |.....:::||     |.......|...:.:
 Worm   195 YCN-PKFENLEHRAVRVHDLHLMGVESNIFYTFANTYFTAEEVTG-----FEYMAKTEFRFNLMF 253

  Fly   439 ------------LPLIACQMFLILS 451
                        :|.|...||||::
 Worm   254 KRVNKLLNVKLSIPSILISMFLIIA 278

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 48/249 (19%)
lgc-24NP_001123110.2 Neur_chan_LBD 29..>178 CDD:280998 32/162 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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