Protein Alignment NtR and chrna6

DIOPT Version :10

• Sequence 1: NP_651958.2
• Gene: NtR / 43935
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_001036149.1
• Gene: chrna6 / 555747
• ZFINID: ZDB-GENE-090312-91
• Length: 512
• Species: Danio rerio
• Alignment Length: 387
• Identity: 75/387 - (19%)
• Similarity: 146/387 - (37%)
• Gaps: 56/387 - (14%)

  Fly   176 LVINYLSFSSFGSNTARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSIS 240
            |:|..::...|.|......:...|..|...|.|:                  ||.|.|.   ::.
Zfish    12 LLITLITQDCFSSKGEDRLFRRLFRRYNQFIRPV------------------ENVSDPV---TVE 55

  Fly   241 FHFQTRSLA-YEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGAL 304
            |......|. .::.:.:::|.:.:...|.|.:|.|.|.:|..:|....|..:||:|.:.:.|.|
Zfish    56 FEVSISQLVKVDEVNQIMETNLWLRHIWNDYKLKWSPAEFDGIEFIRVPSNKIWRPDIVLYNNA- 119

  Fly   305 QSMGQVL--QSYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVA 367
              :|..|  ...:.::..:|:|| :.......|.|......:|.:...|.::.|          :
Zfish   120 --VGDFLVEDKTKALLKFDGTIT-WVPPAIFKSSCPMDITYFPFDYQNCSMKFG----------S 171

  Fly   368 LIYDDQR-KPIAPNEHVNTPSGWSFTQMSVVLVENDS-----QRRYNPKGMMQKMTGDVAIEFTL 426
            ..||..: ..:.....||....|...:..::    |:     ..:||   ..:::..|:...|.:
Zfish   172 WTYDKAKIDLVLIGSKVNLKDFWESGEWEII----DAPGYKHDIKYN---CCEEIYPDITYSFYI 229

  Fly   427 QRNRSFYMTVFYLPLIACQMFLILSFVLRST--RRSSLILIALLIAAWGLMYMTR-YASPHYVPP 488
            :|...||.....:|.:......:|.|.|.|.  .:.:|.:..||.....|:.:|. ..|...|.|
Zfish   230 RRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIP 294

  Fly   489 MMTAYKVI-MMTTTYCYILHICIIWLDLYPPRSKA-PGWLVRVINSNVLRCILGLRFSDSTD 548
            ::..|.:. |:..|...::.:.::.:....|.:.. |.|:..|....:.|.:|..|..|.::
Zfish   295 LIGEYLLFTMIFVTLSIVITVFVLNVHYRTPMTHTMPSWVHTVFLRALPRIMLMRRPLDLSE 356

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	89..191	CDD:463505	4/14 (29%)
		Neur_chan_LBD	212..429	CDD:460752	40/225 (18%)
chrna6	NP_001036149.1	LIC	38..504	CDD:455710	70/361 (19%)
		LGIC_ECD	38..233	CDD:475126	44/236 (19%)