DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NtR and Chrnb2

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_062170.1 Gene:Chrnb2 / 54239 RGDID:2350 Length:500 Species:Rattus norvegicus


Alignment Length:380 Identity:87/380 - (22%)
Similarity:148/380 - (38%) Gaps:79/380 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 EETKTEKLL--SHLNIQAENASMPANLSSISFHFQTRSL-AYEQTSSLLQTRMHMMMHWRDSRLV 273
            ||...|.||  |..|.....|:..:.|.::........| :..:...::.|.:.:...|.|.||.
  Rat    28 EERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQLISVHEREQIMTTNVWLTQEWEDYRLT 92

  Fly   274 WKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYAN------GSI-----TLY 327
            ||||||.:::....|...||.|.:.:.|.| ..|      ||:..|:|      |||     .:|
  Rat    93 WKPEDFDNMKKVRLPSKHIWLPDVVLYNNA-DGM------YEVSFYSNAVVSYDGSIFWLPPAIY 150

  Fly   328 --AQNLQLASW------CVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVN 384
              |..:::..:      |....|:|..:|...|:.|       :.:||.:.|            .
  Rat   151 KSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLVL-------KSDVASLDD------------F 196

  Fly   385 TPSG-WSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFL 448
            |||| |.       ::....:|..||.   .....|:..:|.::|...||.....:|.:......
  Rat   197 TPSGEWD-------IIALPGRRNENPD---DSTYVDITYDFIIRRKPLFYTINLIIPCVLITSLA 251

  Fly   449 ILSFVLRST--RRSSLILIALLIAAWGLMYMTRYASPHYVP-PMMTAYKVI-MMTTTYCYILHIC 509
            ||.|.|.|.  .:.:|.:..||.....|:.:::...|..:. |::..|.:. |:..|:..:..:|
  Rat   252 ILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVC 316

  Fly   510 IIWLDLYPP--RSKAPGWLVRVINSNVLRCILGLRFSDSTDYCDIQENPWHHMAK 562
            ::.:....|  .:.|| | |:|:....|..:|.|            :.|.|..|:
  Rat   317 VLNVHHRSPTTHTMAP-W-VKVVFLEKLPTLLFL------------QQPRHRCAR 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 56/239 (23%)
Chrnb2NP_062170.1 LIC 28..477 CDD:455710 87/380 (23%)
LGIC_ECD_nAChR_B2 30..233 CDD:349826 55/238 (23%)
Cys-loop 154..168 CDD:349826 0/13 (0%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.