Protein Alignment: NtR and nAChRbeta2

• Sequence 1: NP_651958.2
• Gene: NtR
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_524483.1
• Gene: nAChRbeta2
• FlyBaseID: FBgn0004118
• Length: 519
• Species: Drosophila melanogaster
• Alignment Length: 407
• Identity: 78/408 (19%)
• Similarity: 139/408 (34%)
• Gaps: 104/408 (25%)

  Fly   185 SFGSN--TARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRS 247
            ||.:|  |.| .||.....|...|.|:|   ..||.|...|.::.... :..||.
  Fly    23 SFEANPDTKR-LYDDLLSNYNRLIRPVV---NNTETLTVWLGLKLSQL-IEVNLK---------- 72

  Fly   248 LAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQ 312
                  :.::.|.:.:...|.|.:|.|.||::|.:|....|...||.|.:.:.|....:....|.
  Fly    73 ------NQVMTTNLWVKQRWFDYKLRWDPEEYGGVEQLYVPSEHIWVPDIVLYNNWDGNYEVTLM 131

  Fly   313 SYELMVYANGSI-----TLYAQNLQLASWCVDSARNWPSERVTCDIELG---LNGQEGQENVALI 369
            :...:.| .|.:     .:|      .|.|..:...:|.:...|.::.|   .||.:    |.|
  Fly   132 TKATLKY-TGEVFWEPPAIY------KSSCEMNVEYFPYDEQICFMKFGSWTYNGAQ----VDL- 184

  Fly   370 YDDQRKPIAPNEHVNTPSGWSFTQMSVVLVE-------------NDSQRRYNPKGMMQKMTGDVA 421
                       :|::...|.:..|:.:.|.|             ......|.|..:  :...|:.
  Fly   185 -----------KHLDQIPGSNLVQVGIDLTEFYLSVEWDILEVPATKNEEYYPDTL--EPFSDIT 236

  Fly   422 IEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMTRYASPHYV 486
            .:.|::|...||.....:|.:|.....:|.|.|.|.....:.|...::.:..:.::   .....:
  Fly   237 FKLTMRRKTLFYTVNLIVPCVALTFLTVLVFYLPSDSGEKVTLCISILVSLTVFFL---LLAEII 298

  Fly   487 PPMMTAYKVIMMTTTYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRF-SDSTDYC 550
            ||...|..::.....:..||....:|..:                     |:|.:.| |.||
  Fly   299 PPTSLAVPLLGKYLLFTMILVSLSVWTTV---------------------CVLNIHFRSPST--- 339

  Fly   551 DIQENPWHHMAKILNNL 567
                   |:|:.::..|
  Fly   340 -------HNMSPLVRKL 349

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052	4/8 (50%)
		Neur_chan_LBD	212..429	CDD:280998	43/238 (18%)
nAChRbeta2	NP_524483.1	LIC	9..479	CDD:273305	78/408 (19%)
		Neur_chan_LBD	31..245	CDD:280998	50/260 (19%)
		Neur_chan_memb	252..479	CDD:280999	22/133 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			P	PTHR18945
RoundUp	0	0.000	Not matched by this tool.
	2	2.000