DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and nAChRalpha2

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster


Alignment Length:411 Identity:76/411 - (18%)
Similarity:146/411 - (35%) Gaps:114/411 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 ARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYEQTSS 255
            |:..||.....|...|.|:   ...|:.:|..|.::.... :..||.                ..
  Fly    45 AKRLYDDLLSNYNRLIRPV---SNNTDTVLVKLGLRLSQL-IDLNLK----------------DQ 89

  Fly   256 LLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGA-----LQSMGQVLQSYE 315
            :|.|.:.:...|:|.:..|.|.::|.:.....|...||.|.:.:.|.|     :.:|.:.:..| 
  Fly    90 ILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAILHY- 153

  Fly   316 LMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQE----NVALIYD-DQRK 375
                 .|.: ::.......|.|....|.:|.::.||.::.|....:|.:    :::...| |.:.
  Fly   154 -----TGKV-VWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKV 212

  Fly   376 PIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFY------- 433
            .|..:.....||    .:..::.|..:...:|.|  ...:...|:....||:|...||       
  Fly   213 EIGIDLREYYPS----VEWDILGVPAERHEKYYP--CCAEPYPDIFFNITLRRKTLFYTVNLIIP 271

  Fly   434 --------MTVFYLP--------------LIACQMFLILSFVLRSTRRS----------SLILIA 466
                    :.|||||              |.....||::|.::.||..:          :::|:.
  Fly   272 CVGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVG 336

  Fly   467 LLIAAWGLMYMTRYASP--HYVPPMMTAY------KVIMMTTTYCYILHICIIWLDLYPPRSKAP 523
            |.:....::....|..|  |.:.|.:.::      |:::|                      :.|
  Fly   337 LSVVITIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLM----------------------RVP 379

  Fly   524 GWLVRVINSNVLRCILGLRFS 544
            ..|:|.:.:|.:.  .||:||
  Fly   380 KDLLRDLAANKIN--YGLKFS 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505 76/411 (18%)
Neur_chan_LBD 212..429 CDD:460752 40/226 (18%)
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 47/250 (19%)
LIC 47..544 CDD:455710 75/409 (18%)
Cys-loop 169..183 CDD:349832 3/13 (23%)

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