DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and nAChRalpha2

DIOPT Version :9

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_524482.1 Gene:nAChRalpha2 / 42919 FlyBaseID:FBgn0000039 Length:576 Species:Drosophila melanogaster


Alignment Length:411 Identity:76/411 - (18%)
Similarity:146/411 - (35%) Gaps:114/411 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   191 ARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYEQTSS 255
            |:..||.....|...|.|:   ...|:.:|..|.::.... :..||.                ..
  Fly    45 AKRLYDDLLSNYNRLIRPV---SNNTDTVLVKLGLRLSQL-IDLNLK----------------DQ 89

  Fly   256 LLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGA-----LQSMGQVLQSYE 315
            :|.|.:.:...|:|.:..|.|.::|.:.....|...||.|.:.:.|.|     :.:|.:.:..| 
  Fly    90 ILTTNVWLEHEWQDHKFKWDPSEYGGVTELYVPSEHIWLPDIVLYNNADGEYVVTTMTKAILHY- 153

  Fly   316 LMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQE----NVALIYD-DQRK 375
                 .|.: ::.......|.|....|.:|.::.||.::.|....:|.:    :::...| |.:.
  Fly   154 -----TGKV-VWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGDQIDLKHISQKNDKDNKV 212

  Fly   376 PIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFY------- 433
            .|..:.....||    .:..::.|..:...:|.|  ...:...|:....||:|...||       
  Fly   213 EIGIDLREYYPS----VEWDILGVPAERHEKYYP--CCAEPYPDIFFNITLRRKTLFYTVNLIIP 271

  Fly   434 --------MTVFYLP--------------LIACQMFLILSFVLRSTRRS----------SLILIA 466
                    :.|||||              |.....||::|.::.||..:          :::|:.
  Fly   272 CVGISYLSVLVFYLPADSGEKIALCISILLSQTMFFLLISEIIPSTSLALPLLGKYLLFTMLLVG 336

  Fly   467 LLIAAWGLMYMTRYASP--HYVPPMMTAY------KVIMMTTTYCYILHICIIWLDLYPPRSKAP 523
            |.:....::....|..|  |.:.|.:.::      |:::|                      :.|
  Fly   337 LSVVITIIILNIHYRKPSTHKMRPWIRSFFIKRLPKLLLM----------------------RVP 379

  Fly   524 GWLVRVINSNVLRCILGLRFS 544
            ..|:|.:.:|.:.  .||:||
  Fly   380 KDLLRDLAANKIN--YGLKFS 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052 76/411 (18%)
Neur_chan_LBD 212..429 CDD:280998 40/226 (18%)
nAChRalpha2NP_524482.1 LGIC_ECD_nAChR_proto_alpha-like 44..263 CDD:349832 47/250 (19%)
LIC 47..544 CDD:273305 75/409 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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