Protein Alignment: NtR and nAChRbeta1

• Sequence 1: NP_651958.2
• Gene: NtR
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_523927.2
• Gene: nAChRbeta1
• FlyBaseID: FBgn0000038
• Length: 521
• Species: Drosophila melanogaster
• Alignment Length: 432
• Identity: 86/433 (20%)
• Similarity: 158/433 (36%)
• Gaps: 91/433 (21%)

  Fly   176 LVINYLSFSSFGSNTARWFYDCGFDGYGSEIAPIVKEETKTEKL--------LSHLNIQAENASM 232
            ||:...|..|...:..|...|. |.||...|.|:   :..|:|:        :..:|:..:|..|
  Fly    14 LVLVAFSLVSASEDEERLVRDL-FRGYNKLIRPV---QNMTQKVGVRFGLAFVQLINVNEKNQIM 74

  Fly   233 PANLSSISFHFQTRSLAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHM 297
            .:|                         :.:.:.|.|.:|.|...|:|.:.....|..::|||.:
  Fly    75 KSN-------------------------VWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDI 114

  Fly   298 NVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELG---LNG 359
            .:.|.| ....:|.....:::|..|.: |:.......|.|......:|.::.||.::.|   .||
  Fly   115 VLFNNA-DGNYEVRYKSNVLIYPTGEV-LWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNG 177

  Fly   360 QEGQENVALIYDDQRKPIAPNEHVNTPSGWSFTQMSVVLV-------ENDSQRRYNPKGMMQKMT 417
            .  |.::|| |:::       ..|:....|......::.|       |.||.         ....
  Fly   178 D--QVSLAL-YNNK-------NFVDLSDYWKSGTWDIIEVPAYLNVYEGDSN---------HPTE 223

  Fly   418 GDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSL-----ILIALLIAAWGLMYM 477
            .|:.....::|...||.....||.:......:|.|.|.:.....:     ||::|::.   |:.:
  Fly   224 TDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVF---LLLV 285

  Fly   478 TRYASP-HYVPPMMTAYKV--IMMTTTYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCIL 539
            ::...| ..|.|::..|.:  .:|.|....:..|.|.| :...||:......:|.|..:.|...|
  Fly   286 SKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINW-NFRGPRTHRMPMYIRSIFLHYLPAFL 349

  Fly   540 GLRFSDSTDYCDIQENPWHHM-----------AKILNNLSSI 570
            .::....|....:.|.|...|           |::..::|:|
  Fly   350 FMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAI 391

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052	4/15 (27%)
		Neur_chan_LBD	212..429	CDD:280998	42/235 (18%)
nAChRbeta1	NP_523927.2	LIC	8..500	CDD:273305	86/433 (20%)
		Neur_chan_LBD	28..236	CDD:280998	49/258 (19%)
		Neur_chan_memb	243..498	CDD:280999	31/154 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			P	PTHR18945
RoundUp	0	0.000	Not matched by this tool.
	2	2.000