Protein Alignment: NtR and nAChRbeta3

• Sequence 1: NP_651958.2
• Gene: NtR
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_525098.1
• Gene: nAChRbeta3
• FlyBaseID: FBgn0031261
• Length: 441
• Species: Drosophila melanogaster
• Alignment Length: 448
• Identity: 90/449 (20%)
• Similarity: 161/449 (36%)
• Gaps: 134/449 (30%)

  Fly   199 FDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYEQTSSLLQTRMHM 263
            |..|.|::.|:.:                   ..|.|   :|.......:..::.:..|.|...:
  Fly    59 FTNYDSDVQPVFQ-------------------GTPTN---VSLEMVVTYIDIDELNGKLTTHCWL 101

  Fly   264 MMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLN---GALQSMGQVLQSYE-------LMV 318
            .:.|||...||:|..:.::.........:|.|.:.:.|   |.|.:..||..|::       ..|
  Fly   102 NLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQVTLSHDGHFRWMPPAV 166

  Fly   319 YANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGL---------NGQEGQENVALIYDDQR 374
            |              .::|..:..|||.::.:|.:::|.         ||....|  :|.:||.
  Fly   167 Y--------------TAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGTARGE--SLDHDDL- 214

  Fly   375 KPIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYL 439
                    |.:|. |...         ||:..:    :.|...|.:....|.||..|.|..|.|.
  Fly   215 --------VQSPE-WEIV---------DSRAHF----VSQDYYGYMEYTLTAQRRSSMYTAVIYT 257

  Fly   440 PLIACQMFLILS-FVLRSTRRSSLI----LIALLIAAWGLMYMTRYASPHYVPPMM---TAYKVI 496
            | .:|.:.|.|| |.|........|    |:.::|||: |||..:      :.|::   |...||
  Fly   258 P-ASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAF-LMYFAQ------LLPVLSNNTPLVVI 314

  Fly   497 MMTTTYCY-----ILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRFS------------ 544
            ..:|:..|     |:.:.:::|.....:.:.|..|.::::.::...:|...||
  Fly   315 FYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKE 379

  Fly   545 -DSTDY--CDIQEN------------------PWHHMAKILNNLSSILVIITFAIVDI 581
             |...|  .|.||:                  .|..:|..::.:|.:...:.|.|:.|
  Fly   380 MDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLATAVDRISFVSFSLAFLILAI 437

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052
		Neur_chan_LBD	212..429	CDD:280998	43/236 (18%)
nAChRbeta3	NP_525098.1	LIC	39..437	CDD:273305	89/447 (20%)
		Neur_chan_LBD	52..247	CDD:280998	47/249 (19%)
		Neur_chan_memb	255..434	CDD:280999	38/187 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			P	PTHR18945
RoundUp	0	0.000	Not matched by this tool.
	2	2.000