Protein Alignment: NtR and nAChRalpha3

• Sequence 1: NP_651958.2
• Gene: NtR
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_001285015.1
• Gene: nAChRalpha3
• FlyBaseID: FBgn0015519
• Length: 795
• Species: Drosophila melanogaster
• Alignment Length: 412
• Identity: 79/413 (19%)
• Similarity: 160/413 (39%)
• Gaps: 63/413 (15%)

  Fly   176 LVINYLSFSSFGSNTARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSIS 240
            ||::::| ||..:..|:..||.....|...:.|:|   ..|:.|...:.::.... :..||.:
  Fly    12 LVLSFIS-SSTANPDAKRLYDDLLSNYNKLVRPVV---NVTDALTVRIKLKLSQL-IDVNLKN-- 69

  Fly   241 FHFQTRSLAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQ 305
             ...|.:|..||:             |.|.:|.|:|:::|.:|....|...||:|.:.:.|.|..
  Fly    70 -QIMTTNLWVEQS-------------WYDYKLKWEPKEYGGVEMLHVPSDHIWRPDIVLYNNADG 120

  Fly   306 SMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIY 370
            :....|.:...:.| .|.:......:..:| |......:|.:..||.::.|          :..|
  Fly   121 NFEVTLATKATLNY-TGRVEWRPPAIYKSS-CEIDVEYFPFDEQTCVMKFG----------SWTY 173

  Fly   371 DDQRKPIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYN----PKGMMQKMTG-------DVAIEF 424
            |..:..:   .|::..:|.:..::.|.|.|..:...::    |....:|...       |:....
  Fly   174 DGFQVDL---RHIDELNGTNVVEVGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNI 235

  Fly   425 TLQRNRSFYMTVFYLPLIACQMFLILSFVLRS---TRRSSLILIALLIAAWGLMYMTRYASPHYV 486
            |::|...||.....:|.:......||.|.|.|   .:.|..|.|.|.:..:.|:..........|
  Fly   236 TMRRKTLFYTVNLIIPCMGISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLV 300

  Fly   487 PPMMTAYKVI-MMTTTYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYC 550
            .|::..:.:. |:..|:...:.:.::.:....|::......||.:..|.|...|.:|
  Fly   301 VPLLGKFVLFTMILDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMR-------- 357

  Fly   551 DIQENPWHHMAKILNNLSSILV 572
                .|.:.:::::.:...::|
  Fly   358 ----RPLYPISEMIKSSRRLMV 375

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052	5/15 (33%)
		Neur_chan_LBD	212..429	CDD:280998	42/228 (18%)
nAChRalpha3	NP_001285015.1	Neur_chan_LBD	26..241	CDD:280998	48/250 (19%)
		Neur_chan_memb	248..>359	CDD:280999	22/123 (18%)
		Neur_chan_memb	<683..760	CDD:280999

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			P	PTHR18945
RoundUp	0	0.000	Not matched by this tool.
	2	2.000