DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and Chrnb4

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_434693.1 Gene:Chrnb4 RGDID:2351 Length:495 Species:Rattus norvegicus

Alignment Length:326 Identity:72/327 (22%)
Similarity:128/327 (39%) Gaps:67/327 (20%)


  Fly   217 EKLLSHL--NIQAENASMPANLSS--ISFHFQ---TRSLAYEQTSSLLQTRMHMMMHWRDSRLVW 274
            |||:..|  ..:..|...||..||  ||...:   ::.::..:...::.|.:.:...|.|.||.|
  Rat    27 EKLMDDLLNKTRYNNLIRPATSSSQLISIRLELSLSQLISVNEREQIMTTSIWLKQEWTDYRLAW 91

  Fly   275 KPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVY------ANGSI-----TLY- 327
            ....:..:.....|..|:|.|.:.:.|.|       ..:||:.||      :||||     .:| 
  Rat    92 NSSCYEGVNILRIPAKRVWLPDIVLYNNA-------DGTYEVSVYTNVIVRSNGSIQWLPPAIYK 149

  Fly   328 -AQNLQLASW------CVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNT 385
             |..:::..:      |....|:|..:....|:.|        ::...|.||           .|
  Rat   150 SACKIEVKHFPFDQQNCTLKFRSWTYDHTEIDMVL--------KSPTAIMDD-----------FT 195

  Fly   386 PSG-WSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLI 449
            ||| |.       :|....:|..||:   .....||..:|.::|...||.....:|.:......|
  Rat   196 PSGEWD-------IVALPGRRTVNPQ---DPSYVDVTYDFIIKRKPLFYTINLIIPCVLITSLAI 250

  Fly   450 LSFVLRST--RRSSLILIALLIAAWGLMYMTRYASPHYVP-PMMTAYKVI-MMTTTYCYILHICI 510
            |.|.|.|.  .:.:|.:..||...:.|:.:::...|..:. |::..|.:. |:..|:..:..:|:
  Rat   251 LVFYLPSDCGEKMTLCISVLLALTFFLLLISKIVPPTSLDIPLIGKYLLFTMVLVTFSIVTTVCV 315

  Fly   511 I 511
            :
  Rat   316 L 316

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 54/239 (23%)
Chrnb4NP_434693.1 LIC 21..483 CDD:273305 72/327 (22%)
Neur_chan_LBD 26..231 CDD:280998 54/240 (23%)
Neur_chan_memb 238..481 CDD:280999 16/80 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR18945
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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