DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and Chrna5

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_058774.2 Gene:Chrna5 / 25102 RGDID:2347 Length:467 Species:Rattus norvegicus


Alignment Length:406 Identity:70/406 - (17%)
Similarity:141/406 - (34%) Gaps:128/406 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 EQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVL---NGALQSMGQVLQ 312
            ::.:.|:.|.:.:...|.|.:|.|.|:|:|.::....|...:|.|.:.:.   :|..:.     .
  Rat    87 DEKNQLMTTNVWLKQEWIDVKLRWNPDDYGGIKIIRVPSDSLWIPDIVLFDNADGRFEG-----A 146

  Fly   313 SYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPI 377
            |.:.:|..||::| :.|.....|.|......:|.:...|.::.|                     
  Rat   147 STKTVVRYNGTVT-WTQPANYKSSCTIDVTFFPFDLQNCSMKFG--------------------- 189

  Fly   378 APNEHVNTPSGWSF--TQMSVVLVENDSQRR-YNPKGMMQKMT-----GD----------VAIEF 424
                      .|::  :|:.::|.:.|..|. :...|..:.|:     |:          :...|
  Rat   190 ----------SWTYDGSQVDIILEDQDVDRTDFFDNGEWEIMSAMGSKGNRTDSCCWYPYITYSF 244

  Fly   425 TLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSL-----ILIALLIAAWGLMYMTRYASPH 484
            .::|...||.....:|.|......::.|.|.|.....:     :|::|.:  :.|:......|..
  Rat   245 VIKRLPLFYTLFLIIPCIGLSFLTVVVFYLPSNEGEKISLCTSVLVSLTV--FLLVIEEIIPSSS 307

  Fly   485 YVPPMMTAYKVI--------MMTTTYCYILH-------------ICIIWLDLYPP----RSKAPG 524
            .|.|::..|.|.        :|.|.:...:|             :..|:|...|.    ||.|..
  Rat   308 KVIPLIGEYLVFTMIFVTLSIMVTVFAINIHHRSSSTHNAMAPWVRKIFLHKLPKLLCMRSHADR 372

  Fly   525 WL------------------------VRVINSNVLRCILGLRFSDSTDYCDIQENPWHHMAKILN 565
            :.                        :|.|..:|::         ..|..::.|: |..:|::|:
  Rat   373 YFTQREEAESGAGPKSRNTLEAALDCIRYITRHVVK---------ENDVREVVED-WKFIAQVLD 427

  Fly   566 NLSSILVIITFAIVDI 581
            .    :.:.||.:|.|
  Rat   428 R----MFLWTFLLVSI 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 33/198 (17%)
Chrna5NP_058774.2 LGIC_ECD 45..251 CDD:475126 34/200 (17%)
Neur_chan_memb 257..446 CDD:460753 34/199 (17%)
Blue background indicates that the domain is not in the aligned region.

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