Protein Alignment: NtR and Chrna3

• Sequence 1: NP_651958.2
• Gene: NtR
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_434692.2
• Gene: Chrna3
• RGDID: 2345
• Length: 499
• Species: Rattus norvegicus
• Alignment Length: 422
• Identity: 80/423 (19%)
• Similarity: 143/423 (34%)
• Gaps: 94/423 (22%)

  Fly   199 FDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLA-YEQTSSLLQTRMH 262
            |:.|...|.|:.                  |.|.|.   .|.|......|. .::.:.:::|.:.
  Rat    37 FEDYNEIIRPVA------------------NVSHPV---IIQFEVSMSQLVKVDEVNQIMETNLW 80

  Fly   263 MMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLY 327
            :...|.|.:|.|||.|:..:|....|..:||||.:.:.|.| ....||....:.::...|.:|..
  Rat    81 LKQIWNDYKLKWKPSDYQGVEFMRVPAEKIWKPDIVLYNNA-DGDFQVDDKTKALLKYTGEVTWI 144

  Fly   328 AQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQR-KPIAPNEHVNTPSGWSF 391
            ...: ..|.|......:|.:...|.::.|          :..||..: ..:.....:|....|..
  Rat   145 PPAI-FKSSCKIDVTYFPFDYQNCTMKFG----------SWSYDKAKIDLVLIGSSMNLKDYWES 198

  Fly   392 TQMSVVLVEN-DSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLR 455
            .:.:::.... ..:.:||   ..:::..|:.....::|...||.....:|.:......:|.|.|.
  Rat   199 GEWAIIKAPGYKHEIKYN---CCEEIYQDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLP 260

  Fly   456 ST--RRSSLILIALLIAAWGLMYMTR-YASPHYVPPMMTAYKVIMMTTTYCYILHICIIWLDLY- 516
            |.  .:.:|.:..||.....|:.:|. ..|...|.|::..|.:..|......|: |.:..|:::
  Rat   261 SDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIV-ITVFVLNVHY 324

  Fly   517 --PPRSKAPGWLVRVINSNVL---------------------------------------RCILG 540
              |.....|.| |:.:..|:|                                       .|..|
  Rat   325 RTPTTHTMPTW-VKAVFLNLLPRVMFMTRPTSGEGDTPKTRTFYGAELSNLNCFSRADSKSCKEG 388

  Fly   541 LRFSDST-DYCDIQENPWHHMAKILNNLSSIL 571
            ....|.| .||       ||....::|.|:.|
  Rat   389 YPCQDGTCGYC-------HHRRVKISNFSANL 413

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052
		Neur_chan_LBD	212..429	CDD:280998	39/220 (18%)
Chrna3	NP_434692.2	LIC	24..490	CDD:273305	80/423 (19%)
		Neur_chan_LBD	29..235	CDD:280998	43/234 (18%)
		Neur_chan_memb	242..489	CDD:280999	35/182 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			O	PTHR18945
Phylome	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.000