DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and lgc-52

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_502839.3 Gene:lgc-52 WormBaseID:WBGene00013517 Length:423 Species:Caenorhabditis elegans

Alignment Length:211 Identity:47/212 (22%)
Similarity:77/212 (36%) Gaps:83/212 (39%)


  Fly   267 WRDSRLVWKPEDFGSLE------SFEHP-DLRIWKPHMNVLNGALQSMGQVLQSYE----LMVYA 320
            |.|.||.     |..|:      |.:|. :.::|.|::.::|   ....:|..|.:    ||::.
 Worm    98 WNDKRLA-----FSHLDPCRKNLSLDHDMEPKLWSPNVCIVN---SKSTKVHDSPKPNILLMIFP 154

  Fly   321 NGSITLYAQNLQLASW--CVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHV 383
            ||:|.|   |.::.|.  |..:.||:|.:.:.|               :|:::            
 Worm   155 NGTIWL---NYRIRSEAPCQMNLRNFPLDSIRC---------------SLVFE------------ 189

  Fly   384 NTPSGWSFTQMSVVL----------VENDSQRRYN-PKGMMQKMT-GDVAIEFT----------- 425
                .:|:....|.|          |.||    || |...|..:| |.|...:|           
 Worm   190 ----SYSYNAADVELQWLEWSPVSTVRND----YNLPDFRMTNITYGSVTEAYTAGMWHRLSVSI 246

  Fly   426 -LQRNRSFYMTVFYLP 440
             .:|...||:...|||
 Worm   247 HFERLYGFYILQMYLP 262

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 42/199 (21%)
lgc-52NP_502839.3 Neur_chan_LBD 45..248 CDD:280998 41/196 (21%)
LIC 52..413 CDD:273305 47/212 (22%)
Neur_chan_memb 259..>338 CDD:280999 3/5 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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