DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and lgc-1

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_504154.5 Gene:lgc-1 WormBaseID:WBGene00020236 Length:371 Species:Caenorhabditis elegans

Alignment Length:231 Identity:44/232 (19%)
Similarity:80/232 (34%) Gaps:50/232 (22%)


  Fly   264 MMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYA-------- 320
            :..|.|.||.|.|.::|.:.....|...||.|.:.:.:           ::|:..:.        
 Worm    82 LAEWTDQRLKWNPLEYGGISHIYVPQRMIWLPEVTIAD-----------AHEVKFFESDDAPRTA 135

  Fly   321 ----NGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQR---KPIA 378
                ||:...|...:. :..|......:|.:|..|.:.:..:.....|.|  |..|..   ||::
 Worm   136 WINYNGTTGFYTSTVS-SVICQLDVYKFPLDRHECGVSVLFHTYFADEYV--IKSDMEPLPKPLS 197

  Fly   379 PNEHVNTPSG-WSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLI 442
                 ...:| |..|.:.|  .|......::   .:|:...      .::||..||:|:..:|..
 Worm   198 -----QLGNGEWKVTYIGV--AEEIGNGNFS---AVQRFVA------RIERNPGFYVTLVMVPAF 246

  Fly   443 ACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMT 478
            ......|::..|........|.:.|.    .:|.||
 Worm   247 FINFLSIIALCLNIENVGEKITVGLT----NIMAMT 278

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 32/181 (18%)
lgc-1NP_504154.5 Neur_chan_LBD 84..>335 CDD:332142 44/230 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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