DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and lgc-17

DIOPT Version :9

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_510028.2 Gene:lgc-17 / 187976 WormBaseID:WBGene00011359 Length:401 Species:Caenorhabditis elegans


Alignment Length:422 Identity:86/422 - (20%)
Similarity:156/422 - (36%) Gaps:110/422 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 LSHLNIQAEN------ASMPANLSSI---SF-----HFQTRS--------LAY-----------E 251
            :.:||.| :|      |:....:||:   ||     |..||:        |.|           |
 Worm    30 IDYLNHQ-DNLTRDLFANYDPTISSVYSSSFDYEPSHNHTRTVDRWNYTILLYYLKLVEVQEPEE 93

  Fly   252 QTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVL----Q 312
            :.|.:|:    ::..|.|.||.|....:.::.:......::|.|.::..     .:.:::    |
 Worm    94 KVSVVLE----LVEQWYDPRLSWNSSLYSNIPTVFVRQEKVWSPTLSAF-----GVNEIIDFRDQ 149

  Fly   313 SYELMVYAN-GSITLYAQNLQLASWCVDSARNWPSERVTCDIELGL---NGQEGQENVALIYDDQ 373
            .:.::...: |.|..|. :::::|.|......:|.:..||.|...|   |.::     ..|.::.
 Worm   150 DFRIVSIDDIGYIQDYL-SVRVSSNCPMDVSRFPFDSQTCQICFCLPIFNIRQ-----VKILNEI 208

  Fly   374 RKPIAPNEHVNT--PSGWSFTQMSVVLVENDSQRRYNPK-GMMQKMTGDVAI-EFTLQRNRSFYM 434
            .:.|...:.:.|  .|.|..    |.|.....|.:|:.. |.|     |:|: |.|::||..:|:
 Worm   209 YEGILQEKIIKTMGNSEWKV----VSLTNRVEQLKYDDDYGNM-----DLAVFEITIRRNPLYYI 264

  Fly   435 TVFYLPLIACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMTRY--ASPHYVP-----PMMTA 492
            .:...|........|:...|:|..:.|.:.:.|.    .:|.||..  .....:|     |::..
 Worm   265 YMIVFPSFVINGISIVGIFLKSADKMSKLNVGLT----NIMTMTFILGVMADKIPRTGSIPLLGI 325

  Fly   493 YKVIMMTTTYCYILHICII-----WLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYCDI 552
            |.:|.:......|..:.:|     |.   .||.|    |.:...|..|...||            
 Worm   326 YIIINLLIMIIAITVVVLITELRQWA---VPRLK----LKKSYISRKLETFLG------------ 371

  Fly   553 QENPWHHMAKILNNL---SSILVIITFAIVDI 581
              :|..:...||...   ::..|||.|...|:
 Worm   372 --SPIEYTCAILLEFLTTANFFVIIGFWFEDL 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 51/253 (20%)
lgc-17NP_510028.2 LGIC_ECD_cation 77..259 CDD:349790 39/205 (19%)
LGIC_TM 261..>317 CDD:365787 11/59 (19%)
TM1 helix 261..286 CDD:349850 4/24 (17%)
TM2 helix 294..315 CDD:349850 4/24 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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