DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and lgc-17

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_510028.2 Gene:lgc-17 / 187976 WormBaseID:WBGene00011359 Length:401 Species:Caenorhabditis elegans


Alignment Length:422 Identity:86/422 - (20%)
Similarity:156/422 - (36%) Gaps:110/422 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 LSHLNIQAEN------ASMPANLSSI---SF-----HFQTRS--------LAY-----------E 251
            :.:||.| :|      |:....:||:   ||     |..||:        |.|           |
 Worm    30 IDYLNHQ-DNLTRDLFANYDPTISSVYSSSFDYEPSHNHTRTVDRWNYTILLYYLKLVEVQEPEE 93

  Fly   252 QTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVL----Q 312
            :.|.:|:    ::..|.|.||.|....:.::.:......::|.|.::..     .:.:::    |
 Worm    94 KVSVVLE----LVEQWYDPRLSWNSSLYSNIPTVFVRQEKVWSPTLSAF-----GVNEIIDFRDQ 149

  Fly   313 SYELMVYAN-GSITLYAQNLQLASWCVDSARNWPSERVTCDIELGL---NGQEGQENVALIYDDQ 373
            .:.::...: |.|..|. :::::|.|......:|.:..||.|...|   |.::     ..|.::.
 Worm   150 DFRIVSIDDIGYIQDYL-SVRVSSNCPMDVSRFPFDSQTCQICFCLPIFNIRQ-----VKILNEI 208

  Fly   374 RKPIAPNEHVNT--PSGWSFTQMSVVLVENDSQRRYNPK-GMMQKMTGDVAI-EFTLQRNRSFYM 434
            .:.|...:.:.|  .|.|..    |.|.....|.:|:.. |.|     |:|: |.|::||..:|:
 Worm   209 YEGILQEKIIKTMGNSEWKV----VSLTNRVEQLKYDDDYGNM-----DLAVFEITIRRNPLYYI 264

  Fly   435 TVFYLPLIACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMTRY--ASPHYVP-----PMMTA 492
            .:...|........|:...|:|..:.|.:.:.|.    .:|.||..  .....:|     |::..
 Worm   265 YMIVFPSFVINGISIVGIFLKSADKMSKLNVGLT----NIMTMTFILGVMADKIPRTGSIPLLGI 325

  Fly   493 YKVIMMTTTYCYILHICII-----WLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYCDI 552
            |.:|.:......|..:.:|     |.   .||.|    |.:...|..|...||            
 Worm   326 YIIINLLIMIIAITVVVLITELRQWA---VPRLK----LKKSYISRKLETFLG------------ 371

  Fly   553 QENPWHHMAKILNNL---SSILVIITFAIVDI 581
              :|..:...||...   ::..|||.|...|:
 Worm   372 --SPIEYTCAILLEFLTTANFFVIIGFWFEDL 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 51/253 (20%)
lgc-17NP_510028.2 LGIC_ECD_cation 77..259 CDD:349790 39/205 (19%)
Cys-loop 174..188 CDD:349790 2/13 (15%)
LGIC_TM 261..>317 CDD:476813 11/59 (19%)
TM1 helix 265..286 CDD:349850 3/20 (15%)
TM2 helix 294..315 CDD:349850 4/24 (17%)
Blue background indicates that the domain is not in the aligned region.

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