DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and lgc-15

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_510025.2 Gene:lgc-15 / 187973 WormBaseID:WBGene00011356 Length:399 Species:Caenorhabditis elegans


Alignment Length:436 Identity:78/436 - (17%)
Similarity:138/436 - (31%) Gaps:132/436 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 FDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYEQTSSLLQTRMHM 263
            |.||.:.|:|:..:...|:.|       ..:...|...:.....|..:.:...:....:...|.:
 Worm    43 FSGYDATISPVYTKVDPTQPL-------GHDPDAPGRWNYTLLLFSLKLVEVTEPQEKVSVVMEV 100

  Fly   264 MMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGA--------------LQSMGQVLQSY 314
            |.:|.|:||.|..||:..:.|.......:|.|.::....:              :.|.|.|....
 Worm   101 MEYWFDARLTWNKEDYDDIASIYTRQANVWSPTLSAFGVSELVDLRDTDFRLVGITSYGMVNTYV 165

  Fly   315 ELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAP 379
            .::|.||..:.:|               .:|.:..||.|...:                  |:..
 Worm   166 SVLVSANCPMDVY---------------KFPFDYQTCQIRFCI------------------PVFT 197

  Fly   380 NEHVNTPSGWSFTQM-SVVLVENDSQRRYNPKGMMQKMTGDV---------------AIEFTLQR 428
            :..|..     |.:: :.||..|..:...|.:..:..:|..|               ..|..::|
 Worm   198 SYEVEI-----FNEIYAGVLTSNAWKTMGNSEWNLVNLTHRVETLKYDDGFANLDLGTFEIKIRR 257

  Fly   429 NRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSLILIALLIAAWGLMYMTRY--ASPHYVP---- 487
            |..:|:.:...|.....:..|:...|:...:.|.:.:.|.    .:|.||..  .....:|    
 Worm   258 NPLYYIYMIIFPSFIINVVSIIGVFLKGADKMSKLNVGLT----NIMTMTFILGVMADKIPRTGT 318

  Fly   488 -PMMTAYKVIMMTTTYCYILHICIIWLDLYPPRSKAPGWLVRVINSNVLRCILGLRFSDSTDYCD 551
             |::..|.:     |...|:.|.|              .:|.||| .:.||...:.....|    
 Worm   319 IPLLGVYII-----TNLVIMLIAI--------------GIVTVIN-ELRRCASPVLKRKQT---- 359

  Fly   552 IQENPWHHMAKILNNLSS------------ILVIITFAIVDITSGF 585
                      |:...|.|            ||.::|||...|..||
 Worm   360 ----------KLSRKLESFIGTPLEYTCAAILELLTFANFAIMIGF 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 37/246 (15%)
lgc-15NP_510025.2 LGIC_ECD_cation 74..258 CDD:349790 34/221 (15%)
Cys-loop 173..187 CDD:349790 2/28 (7%)
LGIC_TM_cation 260..>343 CDD:349853 17/105 (16%)
TM1 helix 260..285 CDD:349853 4/24 (17%)
TM2 helix 293..314 CDD:349853 4/24 (17%)
TM3 helix 324..343 CDD:349853 6/37 (16%)
Blue background indicates that the domain is not in the aligned region.

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