DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and lgc-6

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_501410.3 Gene:lgc-6 / 184621 WormBaseID:WBGene00017544 Length:425 Species:Caenorhabditis elegans


Alignment Length:403 Identity:84/403 - (20%)
Similarity:151/403 - (37%) Gaps:77/403 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 EETKTEKLLSHLNIQAENASM-PA-NLSSISFHFQT-RSLAYEQTSSLLQTRMHMMMHWRDSRLV 273
            |.:.||.||..|..|..:..| |: :|:.::....| ..|:.:||...:|.....::.|.|..|.
 Worm    15 ETSNTETLLQQLFNQTYDVDMKPSDDLTMVTITPNTFILLSMDQTQETIQYSEEFLLRWYDPILH 79

  Fly   274 WKPEDFGSLESFEHPDLRI-----WKPHMNVLNGALQSMGQVLQSYELM--VYANGSITLYAQNL 331
            |..    |..|:|:..::|     |.|.:...||.  .|..:|.....|  :..||.|.. ::..
 Worm    80 WNQ----SAVSYENDWIKISASRAWIPDVIFTNGI--DMDPLLDKDMQMADLRYNGEIRT-SRPA 137

  Fly   332 QLASWCVDSARNWPSERVTCDIELG--------LNGQEGQENVALIYDDQRKPIAPNEHVNTPSG 388
            .::|.|.....|:|.:...|:|.:|        |:.|.....:.    .|:.....|      |.
 Worm   138 VVSSPCPLEIDNFPYDVQKCNISMGSWAFDRRFLSVQSSTIEIL----PQKGRFEGN------SE 192

  Fly   389 WSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLP-LIACQMFLILSF 452
            |..  :|::.|.:||   |:.  ::::...::....||:|...:|:.|...| .|.|.:.:...|
 Worm   193 WEL--ISILTVRSDS---YDT--LLEEWFSEITYVVTLKRKPVYYVLVIQAPTFILCTITIFGLF 250

  Fly   453 VLRSTRRSSLILIALLIAAWGLMYMTRYASPHYVP-----PMMTAYKVI-MMTTTYCYILHICI- 510
            ...|.....|..:.|.:..:..:.|........:|     |::..|.:. :...|...|..|.| 
 Worm   251 TPNSNEDERLSKVELCLNMFAAISMMLQLVSDMMPKASRLPLLGNYIIAEIFVVTAATIASIIIQ 315

  Fly   511 -----IWLDLYPPRSKAPGWLVRVINSNVLRCIL-----GLRFS----DSTDYCDIQENPWHHMA 561
                 :......||.    |         |||::     ..|||    .:....|:.|:.....:
 Worm   316 QTHHHVHTSAIRPRR----W---------LRCLVLCECRRRRFSISEASTVSSVDVPEHAIQSFS 367

  Fly   562 KILNNLSSILVII 574
            .:.::|....|::
 Worm   368 ILKSSLHQTAVLV 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 53/234 (23%)
lgc-6NP_501410.3 LIC 1..424 CDD:455710 84/403 (21%)
LGIC_ECD_cation 42..226 CDD:349790 43/207 (21%)
Cys-loop 143..157 CDD:349790 3/13 (23%)
Blue background indicates that the domain is not in the aligned region.

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