DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and lgc-51

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001293359.1 Gene:lgc-51 WormBaseID:WBGene00017399 Length:450 Species:Caenorhabditis elegans

Alignment Length:191 Identity:42/192 (22%)
Similarity:74/192 (39%) Gaps:45/192 (23%)


  Fly   267 WRDSRLVWKPED--FGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYE----LMVYANGSIT 325
            |.|.||.:...|  ..:|...:..:..||.|::.::|   .....|.:|.:    ||:..||:|.
 Worm    83 WYDPRLAYSHLDNCRQNLSFDDRFEKLIWSPNVCIVN---TKSAHVHRSPKPNVLLMLLPNGTIW 144

  Fly   326 LYAQNLQLASWC-VDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPS-- 387
            | ...:::.|.| :|.|| :|.:...|.               |:::        :...||.|  
 Worm   145 L-NYRIRVQSPCSMDLAR-FPIDTQYCQ---------------LVFE--------SYSYNTASVS 184

  Fly   388 -GWSFTQMSVV----LVENDSQRRYNPKGMMQKMTGD---VAIEFTLQRNRSFYMTVFYLP 440
             .|....::|:    |.:.|..|....:.......|:   :.:||...|...||:...|:|
 Worm   185 VNWMANPVTVLPEISLADFDLSRYRTSRHTEVYKAGEWYRLTVEFEFTRKYGFYILQLYVP 245

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 38/179 (21%)
lgc-51NP_001293359.1 LIC 34..440 CDD:273305 42/192 (22%)
Neur_chan_LBD 35..235 CDD:280998 38/180 (21%)
Neur_chan_memb 242..437 CDD:280999 2/5 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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