DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and Chrnb3

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_598281.1 Gene:Chrnb3 RGDID:621544 Length:464 Species:Rattus norvegicus

Alignment Length:469 Identity:84/470 (18%)
Similarity:159/470 (34%) Gaps:151/470 (32%)


  Fly   199 FDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLA-YEQTSSLLQTRMH 262
            |.||...:.|::                  |:|   ::..:.|..:...|. .::.:.|:.|.:.
  Rat    43 FQGYQKWVRPVL------------------NSS---DIIKVYFGLKISQLVDVDEKNQLMTTNVW 86

  Fly   263 MMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLY 327
            :...|.|.:|.|.||::|.:.|.:.|...:|.|.:.:...|.......|.: :.:|.::|::: :
  Rat    87 LKQEWTDQKLRWNPEEYGGINSIKVPSESLWLPDIVLFENADGRFEGSLMT-KAIVKSSGTVS-W 149

  Fly   328 AQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSF- 391
            .......|.|......:|.:|..|.::.|                               .|:: 
  Rat   150 TPPASYKSSCTMDVTFFPFDRQNCSMKFG-------------------------------SWTYD 183

  Fly   392 -TQMSVVLVENDSQRR----------YNPKGMM-QKMTG-----DVAIEFTLQRNRSFYMTVFYL 439
             |.:.::|:..:..|:          .|.|||. .:..|     .|...|.|:|...||.....:
  Rat   184 GTMVDLILINENVDRKDFFDNGEWEILNAKGMKGNRREGFYSYPFVTYSFVLRRLPLFYTLFLII 248

  Fly   440 PLIACQMFLILSFVLRSTRRSSL-----ILIALLIAAWGLMYMTRYASPHYVPPMMTAYKV-IMM 498
            |.:......:|.|.|.|.....|     :|::|.:  :.|:......|...|.|::..|.: ||:
  Rat   249 PCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLTV--FLLVIEEIIPSSSKVIPLIGEYLLFIMI 311

  Fly   499 TTTYCYILHICII---------------------------WLDLYPP----------------RS 520
            ..|...|:.:.:|                           ||.:..|                |.
  Rat   312 FVTLSIIVTVFVINVHHRSSSTYHPMAPWVKRLFLQRLPRWLCMKDPMDRFSFPDGKESDTAVRG 376

  Fly   521 KAPGWLVRVINSNVLRCILGL--RFSDSTDYCD------------IQENPWHHMAKILNN----- 566
            |..|...:...|:..|.::..  :.|:|..|..            :|:  |..:|::|:.     
  Rat   377 KVSGKRKQTPASDGERVLVAFLEKASESIRYISRHVKKEHFISQVVQD--WKFVAQVLDRIFLWL 439

  Fly   567 ------LSSILVII 574
                  |.|||:.|
  Rat   440 FLIASVLGSILIFI 453

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 40/236 (17%)
Chrnb3NP_598281.1 LIC 29..455 CDD:273305 84/470 (18%)
Neur_chan_LBD 35..239 CDD:280998 44/250 (18%)
Neur_chan_memb 246..452 CDD:280999 37/210 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR18945
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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