DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NtR and Chrne

DIOPT Version :9

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_006532069.1 Gene:Chrne / 11448 MGIID:87894 Length:494 Species:Mus musculus


Alignment Length:379 Identity:79/379 - (20%)
Similarity:146/379 - (38%) Gaps:64/379 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 SFGSNTARWFYDCGFDGYGSEIAPIVK-EETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSL 248
            |.|.|.....|...||.|..|..|:.: |:|.|..|...|          .||.|::        
Mouse    18 SQGKNEELSLYHHLFDNYDPECRPVRRPEDTVTITLKVTL----------TNLISLN-------- 64

  Fly   249 AYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQS 313
               :....|.|.:.:.:.|.|.||.:..:||..:.....|...:|.|.: ||...:.....|...
Mouse    65 ---EKEETLTTSVWIGIDWHDYRLNYSKDDFAGVGILRVPSEHVWLPEI-VLENNIDGQFGVAYD 125

  Fly   314 YELMVYANGSIT-----LYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIY--D 371
            ..::||..|.::     :|      .|.|......:|.:...|.: :..:.....|.|..|:  |
Mouse   126 SNVLVYEGGYVSWLPPAIY------RSTCAVEVTYFPFDWQNCSL-IFRSQTYNAEEVEFIFAVD 183

  Fly   372 DQRKPIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTG---------DVAIEFTLQ 427
            |....|...: ::|.   :||:.....::      |.| ||:::..|         ||.....::
Mouse   184 DDGNTINKID-IDTA---AFTENGEWAID------YCP-GMIRRYEGGSTEGPGETDVIYTLIIR 237

  Fly   428 RNRSFYMTVFYLPLIACQMFLILSFVL--RSTRRSSLILIALLIAAWGLMYMTRYASPH--YVPP 488
            |...||:....:|.:.....::|::.|  ::..:...:.|.:|:|....:::.....|.  ...|
Mouse   238 RKPLFYVINIIVPCVLISGLVLLAYFLPAQAGGQKCTVSINVLLAQTVFLFLIAQKIPETSLSVP 302

  Fly   489 MMTAYKVIMMTTTYCYILHICIIWLD--LYPPRSKAPGWLVRVINSNVLRCILG 540
            ::..|.:.:|......::: |:|.|:  |..|.:.|....:|.|...:|..:||
Mouse   303 LLGRYLIFVMVVATLIVMN-CVIVLNVSLRTPTTHATSPRLRQILLELLPRLLG 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052 3/5 (60%)
Neur_chan_LBD 212..429 CDD:280998 46/232 (20%)
ChrneXP_006532069.1 LGIC_ECD_nAChR_E 49..239 CDD:349831 44/229 (19%)
Neur_chan_memb 247..474 CDD:367256 21/110 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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