DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and Chrnb1

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_033731.3 Gene:Chrnb1 / 11443 MGIID:87890 Length:501 Species:Mus musculus


Alignment Length:370 Identity:79/370 - (21%)
Similarity:141/370 - (38%) Gaps:52/370 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   203 GSEIAPIVK----EETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYEQTSSL------L 257
            |:.:||..:    |....:||.|:.:.....|....:...:|.     .|...|..||      :
Mouse    14 GTPLAPGARGSEAEGQLIKKLFSNYDSSVRPAREVGDRVGVSI-----GLTLAQLISLNEKDEEM 73

  Fly   258 QTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANG 322
            .|::::.:.|.|.||.|.|.:...::|.......:|.|.:.:||.. .....|.....::|...|
Mouse    74 STKVYLDLEWTDYRLSWDPAEHDGIDSLRITAESVWLPDVVLLNNN-DGNFDVALDINVVVSFEG 137

  Fly   323 SIT-----LYAQNLQLA------SW--C--VDSARNWPSERVTCDIELGLNGQEGQENVALIYDD 372
            |:.     ||..:..:.      .|  |  |.|:.::.|..|:....|...|:|.||    :|..
Mouse   138 SVRWQPPGLYRSSCSIQVTYFPFDWQNCTMVFSSYSYDSSEVSLKTGLDPEGEERQE----VYIH 198

  Fly   373 QRKPIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVF 437
            :...|...:       |........|::....:|...:|..:    :|.....::|...||:...
Mouse   199 EGTFIENGQ-------WEIIHKPSRLIQLPGDQRGGKEGHHE----EVIFYLIIRRKPLFYLVNV 252

  Fly   438 YLPLIACQMFLILSFVL--RSTRRSSLILIALL-IAAWGLMYMTRYASPHYVPPMMTAYKVI-MM 498
            ..|.|...:..|..|.|  .:..:..|.:.||| :..:.|:...:........|::..|.:. |:
Mouse   253 IAPCILITLLAIFVFYLPPDAGEKMGLSIFALLTLTVFLLLLADKVPETSLAVPIIIKYLMFTMV 317

  Fly   499 TTTYCYILHICIIWLDLYPPRS-KAPGWLVRVINSNVLRCILGLR 542
            ..|:..||.:.::.|....|.: :.|.| ||.|..:.|...|||:
Mouse   318 LVTFSVILSVVVLNLHHRSPHTHQMPFW-VRQIFIHKLPPYLGLK 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 46/237 (19%)
Chrnb1NP_033731.3 LIC 24..488 CDD:455710 76/360 (21%)
LGIC_ECD_nAChR_B1 27..245 CDD:349825 47/238 (20%)
Cys-loop 151..165 CDD:349825 1/13 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 362..382 79/370 (21%)
Blue background indicates that the domain is not in the aligned region.

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