DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and Chrna4

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_056545.3 Gene:Chrna4 MGIID:87888 Length:629 Species:Mus musculus

Alignment Length:365 Identity:78/366 (21%)
Similarity:146/366 (40%) Gaps:32/366 (9%)


  Fly   213 ETKT---EKLLSHLNIQAENASMP-ANLSSISFHFQTRSLA----YEQTSSLLQTRMHMMMHWRD 269
            ||:.   |:||..|.......|.| ||:|.:.......|:|    .::.:.::.|.:.:...|.|
Mouse    33 ETRAHAEERLLKRLFSGYNKWSRPVANISDVVLVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHD 97

  Fly   270 SRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQLA 334
            .:|.|.|.|:.::.|...|...||:|.:.:.|.|..... |....:..::.:|.:......:..:
Mouse    98 YKLRWDPGDYENVTSIRIPSELIWRPDIVLYNNADGDFA-VTHLTKAHLFYDGRVQWTPPAIYKS 161

  Fly   335 SWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQR-KPIAPNEHVNTPSGWSFTQMSVVL 398
            |..:| ...:|.::..|.::.|          :..||..: ..::.:..|:....|...:..:| 
Mouse   162 SCSID-VTFFPFDQQNCTMKFG----------SWTYDKAKIDLVSMHSRVDQLDFWESGEWVIV- 214

  Fly   399 VENDSQRRYNPK--GMMQKMTGDVAIEFTLQRNRSFYMTVFYLP--LIACQMFLILSFVLRSTRR 459
               |:...||.:  ....::..|:...|.::|...||.....:|  ||:|...|:.........:
Mouse   215 ---DAVGTYNTRKYECCAEIYPDITYAFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK 276

  Fly   460 SSLILIALLIAAWGLMYMTR-YASPHYVPPMMTAYKVI-MMTTTYCYILHICIIWLDLYPPRSKA 522
            .:|.:..||.....|:.:|. ..|...|.|::..|.:. |:..|...::.:.::.:....||:..
Mouse   277 VTLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPRTHT 341

  Fly   523 -PGWLVRVINSNVLRCILGLRFSDSTDYCDIQENPWHHMA 561
             |.|:.||....|.|.:...|.|...|.|.......|.||
Mouse   342 MPAWVRRVFLDIVPRLLFMKRPSVVKDNCRRLIESMHKMA 381

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 45/227 (20%)
Chrna4NP_056545.3 Neur_chan_LBD 39..245 CDD:280998 43/222 (19%)
Neur_chan_memb 252..620 CDD:280999 31/131 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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