Protein Alignment: NtR and Chrna1

• Sequence 1: NP_651958.2
• Gene: NtR
• FlyBaseID: FBgn0029147
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_031415.2
• Gene: Chrna1
• MGIID: 87885
• Length: 457
• Species: Mus musculus
• Alignment Length: 459
• Identity: 84/460 (18%)
• Similarity: 158/460 (34%)
• Gaps: 151/460 (33%)

  Fly   199 FDGYGSEIAPI-----VKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLAYEQTSSLLQ 258
            |:.|.|.:.|:     :.:.|...:|:..:|:                         ::.:.::.
Mouse    32 FEDYSSVVRPVEDHREIVQVTVGLQLIQLINV-------------------------DEVNQIVT 71

  Fly   259 TRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNG-----ALQSMGQVLQSYELMV 318
            |.:.:...|.|..|.|.|:|:|.::....|..:||:|.:.:.|.     |:....:||..|
Mouse    72 TNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLDY---- 132

  Fly   319 YANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEH- 382
              .|.|| :.......|:|.....::|.:...|.::||....:|  :|..|..:..:|...|..
Mouse   133 --TGHIT-WTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTWTYDG--SVVAINPESDQPDLSNFME 192

  Fly   383 -----VNTPSGWS---------------------FTQMSVVLVEN-----------DSQRRYNPK 410
                 :....||.                     ..::.:..:.|           .|...|.|.
Mouse   193 SGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLPLYFIVNVIIPCLLFSFLTSLVFYLPT 257

  Fly   411 GMMQKMTGDVAIEFTLQRNRSFYMTVFYL-------------PLIACQMFLILSFVLRSTRRSSL 462
            ...:|||..:::..:|        |||.|             |||...|...:.||:     :|:
Mouse   258 DSGEKMTLSISVLLSL--------TVFLLVIVELIPSTSSAVPLIGKYMLFTMVFVI-----ASI 309

  Fly   463 ILIALLIAAWGLMYMTRYASP--HYVPPMMTAYKVIMMTTTYCYILHICIIWLDLYPPRSK---- 521
            |:..::|       .|.:.||  |.:|..:.  ||.:.|     |.:|........|.|.|
Mouse   310 IITVIVI-------NTHHRSPSTHIMPEWVR--KVFIDT-----IPNIMFFSTMKRPSRDKQEKR 360

  Fly   522 -------------APGWLVRVINSNVLR------CILGLRFSDSTDYCDIQEN----PWHHMAKI 563
                         .||......:|.:::      .|.|:::...|...|.:.|    .|.::|.:
Mouse   361 IFTEDIDISDISGKPGPPPMGFHSPLIKHPEVKSAIEGVKYIAETMKSDQESNNAAEEWKYVAMV 425

  Fly   564 LNNL 567
            ::::
Mouse   426 MDHI 429

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
NtR	NP_651958.2	Methyltransf_FA	90..191	CDD:289052
		Neur_chan_LBD	212..429	CDD:280998	44/260 (17%)
Chrna1	NP_031415.2	Neur_chan_LBD	24..231	CDD:308532	40/233 (17%)
		Neur_chan_memb	238..446	CDD:308533	43/220 (20%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
eggNOG	1	0.900				E1_KOG3645
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100			O	PTHR18945
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.000