DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and CHRNB3

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_000740.1 Gene:CHRNB3 / 1142 HGNCID:1963 Length:458 Species:Homo sapiens


Alignment Length:458 Identity:92/458 - (20%)
Similarity:138/458 - (30%) Gaps:182/458 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SCRVKNNGMIAIYQHPNGLD---EMFHSITD----LKVQPEEYLCVPCYDDLKVAYRFKQRCIQN 63
            :|..:::|:        |.:   .:|..:.|    |:..|:.||.|                   
Human   302 ACPKRDSGL--------GYEASGRVFKPLVDTQPWLQDGPKSYLSV------------------- 339

  Fly    64 TALRLSSRAKKTTHAPA-----DQSFISSCTDVYTTYDNSVPESTINQNTEKNSCNGRASTSNLA 123
             :..|||.|.|.:..|.     |..|  .|.:..|:     |:.              :.|||:.
Human   340 -SAPLSSTAGKDSTQPGMTTGLDPKF--GCVESGTS-----PKP--------------SPTSNVH 382

  Fly   124 PEMSDPSPLPKIELCIENETIQQDDVEISEELIDPLQDEEDQPLANYIIGVIESATNDNAPKDKA 188
            |.||.||.|.    |.|:......|..:...|                            |....
Human   383 PVMSTPSELS----CKESSPSWSTDSSLEPVL----------------------------PGSPT 415

  Fly   189 QSKEQIGDQTITAATQESGQSTSLLPKLHSLMCEYCFKEFTLLADKIE-HTESH--------KSE 244
            .|:.::..||: |...|.|.||:.| ||.:            |..::| ..::|        |..
Human   416 PSRVRLPCQTL-APGPELGPSTAEL-KLEA------------LTQRLEREMDAHPKADYFGRKLR 466

  Fly   245 AKPFKCV--QEGCGRSF--------KDRVGLRSHVRIHSAVKRFGCRYCPRRFHTLGNQMAHERT 299
            .|.|..|  :..|...|        .||..|..|:.:...::..|..|.|..|..:         
Human   467 GKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDMILQALGKSYHPGCFRCV--------- 522

  Fly   300 HSGEKPFICPKCGKGFAEGGNLKNHI----RFHTGERP--YACNL-------CDKSYR-THYSRS 350
                   ||.:|..|.....:.:|.|    .:|....|  .||.|       .|::.| ....|.
Human   523 -------ICNECLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRD 580

  Fly   351 VHMRSHTNERPYLCGDCGKGFYSSGKLTIHRRTHTGERPYE------CTSCTARFSE----TSSL 405
            .|:..      |.|.|||          :......|.|.|.      |.||..:..|    .:.|
Human   581 YHVEC------YHCEDCG----------LELNDEDGHRCYPLEDHLFCHSCHVKRLEKGPSPAPL 629

  Fly   406 RRH 408
            .:|
Human   630 HQH 632

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505 16/101 (16%)
Neur_chan_LBD 212..429 CDD:460752 49/240 (20%)
CHRNB3NP_000740.1 LIC 23..449 CDD:455710 47/241 (20%)

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