DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and CHRNA3

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_000734.2 Gene:CHRNA3 / 1136 HGNCID:1957 Length:505 Species:Homo sapiens


Alignment Length:242 Identity:45/242 - (18%)
Similarity:75/242 - (30%) Gaps:93/242 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 ESGQSTSLLPKLHSLMCEYCFKEFTLLADKIEHTESHKSEAKPFKCVQEGCGRSFKDRVGLRSHV 269
            ||....:::.::...: .|..|...|:|....|:|         |.:|.|.....|.|...:|..
Human   325 ESDDINAIVSEIEKAL-NYSQKCAFLVASLKNHSE---------KELQSGALEKDKPRTLKQSQP 379

  Fly   270 RIH------------------------SAVKRFGCRYC-----PRRFHTLGNQMAHERTHSGEKP 305
            :.|                        |.:|...|...     |.:..|:..:|.       .||
Human   380 KKHYPPKPTAPSVARMSIKDGLDGETSSRLKALKCHPVNAAAQPEKEGTVEQRMK-------TKP 437

  Fly   306 FICPKCGKGFAEGGNLKNHIRFHTGERPYACNLCDKSYRTHYSRSVHMRSHTNERPYLCGDCGKG 370
            ...||....:.|.||                     |..:.|.|                     
Human   438 RTRPKLFLFYTEAGN---------------------SVGSVYKR--------------------- 460

  Fly   371 FYSSGKLTIHRRTHTGERPYECTSCTAR-FSETSSLRRHMVKKHLNK 416
             |:.|| :|.|...:.:.|.:.|.|::: ::.|..|:|  :|..|:|
Human   461 -YTQGK-SIRRINSSIQLPRKDTVCSSQEWTATCRLKR--LKLELSK 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 43/235 (18%)
CHRNA3NP_000734.2 LIC 30..496 CDD:455710 41/231 (18%)
LGIC_ECD_nAChR_A3 35..241 CDD:349817
Cys-loop 159..173 CDD:349817
Blue background indicates that the domain is not in the aligned region.

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