DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and Chrnb3

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_775304.1 Gene:Chrnb3 / 108043 MGIID:106212 Length:464 Species:Mus musculus


Alignment Length:469 Identity:84/469 - (17%)
Similarity:160/469 - (34%) Gaps:151/469 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 FDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSLA-YEQTSSLLQTRMH 262
            |.||...:.|::                  |:|   ::..:.|..:...|. .::.:.|:.|.:.
Mouse    43 FQGYQKCVRPVL------------------NSS---DIIKVYFGLKISQLVDVDEKNQLMTTNVW 86

  Fly   263 MMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLY 327
            :...|.|.:|.|.|||:|.:.|.:.|...:|.|.:.:...|.......|.: :.:|.::|::: :
Mouse    87 LKQEWTDQKLRWNPEDYGGINSIKVPSESLWLPDIVLFENADGRFEGSLMT-KAIVKSSGTVS-W 149

  Fly   328 AQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSF- 391
            .......|.|......:|.::..|.::.|                               .|:: 
Mouse   150 TPPASYKSSCTMDVTFFPFDKQNCSMKFG-------------------------------SWTYD 183

  Fly   392 -TQMSVVLVENDSQRR----------YNPKGMM-QKMTG-----DVAIEFTLQRNRSFYMTVFYL 439
             |.:.::|:..:..|:          .|.|||. .:..|     .|...|.|:|...||.....:
Mouse   184 GTMVDLILINENVDRKDFFDNGEWEILNAKGMKGNRREGFYSYPFVTYSFVLRRLPLFYTLFLII 248

  Fly   440 PLIACQMFLILSFVLRSTRRSSL-----ILIALLIAAWGLMYMTRYASPHYVPPMMTAYKV-IMM 498
            |.:......:|.|.|.|.....|     :|::|.:  :.|:......|...|.|::..|.: ||:
Mouse   249 PCLGLSFLTVLVFYLPSDEGEKLSLSTSVLVSLTV--FLLVIEEIIPSSSKVIPLIGEYLLFIMI 311

  Fly   499 TTTYCYILHICII---------------------------WLDLYPP----------------RS 520
            ..|...|:.:.:|                           ||.:..|                |.
Mouse   312 FVTLSIIVTVFVINVHHRSSSTYHPMAPWVKRLFLEKLPRWLCMKDPRDRFSFPDGTESKGTVRG 376

  Fly   521 KAPGWLVRVINSNVLRCILGL--RFSDSTDYCD------------IQENPWHHMAKILNN----- 566
            |.||...:...|:..|.::..  :.|:|..|..            :|:  |..:|::|:.     
Mouse   377 KFPGKKKQTPTSDGERVLVAFLEKASESIRYISRHVKKEHFISQVVQD--WKFVAQVLDRIFLWL 439

  Fly   567 ------LSSILVII 574
                  |.|:|:.|
Mouse   440 FLTASVLGSVLIFI 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 39/235 (17%)
Chrnb3NP_775304.1 LIC 6..455 CDD:455710 84/469 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 368..387 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.

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