DRSC/TRiP Functional Genomics Resources

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Protein Alignment: NtR and chrna2

Sequence 1:NP_651958.2 Gene:NtR FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_004914998.1 Gene:chrna2 XenbaseID:XB-GENE-1013893 Length:510 Species:Xenopus tropicalis

Alignment Length:342 Identity:70/343 (20%)
Similarity:135/343 (39%) Gaps:34/343 (10%)


  Fly   212 EETKT---EKLLSHLNIQAENASMPANLSS----ISFHFQTRSLA-YEQTSSLLQTRMHMMMHWR 268
            |.|:|   |:|...|.......|.|...:|    :.|......|. .::.:.::.|.:.:...|.
 Frog    25 ERTRTHAEERLFKRLFTGYNRWSRPVPNTSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQEWN 89

  Fly   269 DSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQL 333
            |.:|.|.|.|:.::.|...|...||.|.:.:.|.| .....:....:..::.||.:......:..
 Frog    90 DYKLRWNPADYDNVTSIRVPSEMIWIPDIVLYNNA-DGEFAITHMTKAHLFHNGKVKWVPPAIYK 153

  Fly   334 ASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNE-HVNTPSGWSFTQMSVV 397
            :|..:| ...:|.::.:|.::.|          :..||.....:...| :|:....|...:.::|
 Frog   154 SSCSID-VTFFPFDQQSCKMKFG----------SWTYDKAWLDLESMERNVDLKDYWESGEWAIV 207

  Fly   398 LVENDSQRRYNPK--GMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRST--R 458
                ::..:||.|  ....::..|:...|.::|...||.....:|.:......:|.|.|.|.  .
 Frog   208 ----NAVGKYNSKKYDCCTEIYPDITYYFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSDCGE 268

  Fly   459 RSSLILIALLIAAWGLMYMTR-YASPHYVPPMMTAYKVIMMTTTYCYILHICIIWLDLY---PPR 519
            :.:|.:..||.....|:.:|. ..|...|.|::..|.:..|......|: |.:..|:::   |..
 Frog   269 KITLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIV-ITVFVLNVHHRSPST 332

  Fly   520 SKAPGWLVRVINSNVLR 536
            .|.|.|:..|...::.|
 Frog   333 HKMPLWVRSVFLDHIPR 349

Known Domains:


GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 44/228 (19%)
chrna2XP_004914998.1 LIC 11..503 CDD:273305 70/343 (20%)
Neur_chan_LBD 32..238 CDD:280998 41/222 (18%)
Neur_chan_memb 245..501 CDD:280999 24/107 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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