DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and chrnb1

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001240739.1 Gene:chrnb1 / 100006941 ZFINID:ZDB-GENE-070821-4 Length:492 Species:Danio rerio


Alignment Length:368 Identity:77/368 - (20%)
Similarity:149/368 - (40%) Gaps:51/368 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 CGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMP-----ANLSSISFHFQTRSLAYEQTSSL 256
            |...|.|:.......|:...:||.|..|.:...|..|     ..:..|...|.:.::..|:.:::
Zfish    11 CCLCGLGAMTGATEMEDKLMKKLFSAYNSKVRPARNPEERVVVRIGMILSSFVSLNMKDEEMNTI 75

  Fly   257 LQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYAN 321
            :.    |.:.|.|.||.|.|:|:|.::.......::|.|.:.::|......|..||.: :..|:|
Zfish    76 VM----MNLEWNDYRLSWNPKDYGGVDVLRISSGKVWLPDIVLINNNDGVFGVALQVH-VQAYSN 135

  Fly   322 GSIT-----LYAQNLQLA------SW--CVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQ 373
            |.:|     ||..:..:.      .|  |....|::..:....|::..|: :.|:|...:|.|  
Zfish   136 GRVTWTPPALYKSSCGVKVTYFPFDWQNCTMVFRSYTYDSSEVDLQHALD-KRGKEIKEIILD-- 197

  Fly   374 RKPIAPNEHVNTPSGWSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFY 438
                         :|:|.:.      |...:.:.:.|.:.:.:..|:.....::|...||:....
Zfish   198 -------------TGFSESG------EWHIRHKVSRKNVREDLYEDITFYLIIERKPMFYVVNIV 243

  Fly   439 LPLIACQMFLILSFVL---RSTRRSSLILIALLIAAWGLMYMTRYASPHYVPPMMTAYKVI-MMT 499
            ||.|...:..|.:|.|   ...:....|.:.|.:..:.|:...:........|::..|.:| |:.
Zfish   244 LPCILITIIAIFNFYLPPDAGEKMGLSINVLLTLTVFLLLLANKIPETSLGVPIIVNYLMITMIL 308

  Fly   500 TTYCYILHICIIWLDLYPPRS-KAPGWLVRVINSNVLRCILGL 541
            .|:..||.:.::.|....|.: :.|.| ||.|..::|...||:
Zfish   309 VTFSVILSVVVLNLHHRSPNTHQMPLW-VRKIFIHMLPPYLGM 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 45/234 (19%)
chrnb1NP_001240739.1 LGIC_ECD 26..235 CDD:475126 46/235 (20%)
Neur_chan_memb 242..478 CDD:460753 26/110 (24%)
Blue background indicates that the domain is not in the aligned region.

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