DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and chrnb1l

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_068078213.1 Gene:chrnb1l / 100005295 ZFINID:ZDB-GENE-060811-1 Length:489 Species:Danio rerio


Alignment Length:440 Identity:83/440 - (18%)
Similarity:156/440 - (35%) Gaps:144/440 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 LAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQ 312
            ::..|.:..:.|.:.|.|.|.|.||.|.|||:..::....|.:::|:|.:.::|   .:.||   
Zfish    60 ISLNQKNGEMTTNVFMNMEWTDYRLSWNPEDYDKIDVVRIPPVKVWRPDIYLIN---NNDGQ--- 118

  Fly   313 SYELMVYAN------GSIT-----LYAQNLQLA------SW--CVDSARNWPSERVTCDIELGLN 358
             :::.:|.|      |:::     :|..:..:.      .|  |....|::..:....|::.||:
Zfish   119 -FDVALYVNVLVRSDGTVSWLPPAIYRSSCSIEVAYFPFDWQNCSMVFRSYTYDSSEVDLQYGLD 182

  Fly   359 GQEGQENVALIYDDQRKPIAPNEHVNTPSG-WSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAI 422
             ::|.|...::.|         |:..|.:| |...            .:.:.|.:...:..|:..
Zfish   183 -EDGNELHEIVID---------ENAFTENGEWQIC------------HKPSRKNVQDDLYEDITF 225

  Fly   423 EFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSLIL-IALLIAAWGLMYMTRYASPH-- 484
            ...::|...||:....:|.|...:..|..|.|.......:.| |::|||....|.:.....|.  
Zfish   226 YLIIERKPLFYVINIIVPCILTSVLAIFVFYLPPGAGEKMTLSISVLIALTVFMLLLADKVPETS 290

  Fly   485 -YVPPMMTAYKVIMMTTTYCYILHICIIWLDLY---PPRSKAPGWLVRVINSNVLRCILGL---- 541
             .:|.::......|:..|:..||.:.:  |:|:   |.....||| ||.:..|:|...||:    
Zfish   291 LAIPIIVNYVMFTMILVTFSVILSVVV--LNLHHRTPSTHHMPGW-VRKVFINLLPRYLGVLRPT 352

  Fly   542 -----------------------------------------------------RFSDSTDYC--- 550
                                                                 |||:|.:||   
Zfish   353 PEEPVEEEPKENVPMGCLGNSLRPGGEYFIRKINPELVMPWRGSHNESTVKLQRFSNSDNYCLIL 417

  Fly   551 ------------------------DIQENPWHHMAKILNNLSS-ILVIIT 575
                                    |...:.|.::|.:|:.|.. :.|:||
Zfish   418 PPNLKSAIAAITYMSEQLKKQDVDDTMTDDWQYIAVVLDRLFLWLFVVIT 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 37/200 (19%)
chrnb1lXP_068078213.1 LIC 2..476 CDD:455710 83/440 (19%)
LGIC_ECD_nAChR_B1 23..233 CDD:349825 38/201 (19%)
Cys-loop 147..161 CDD:349825 1/13 (8%)
Blue background indicates that the domain is not in the aligned region.

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