DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and Meics

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_524062.1 Gene:Meics / 39539 FlyBaseID:FBgn0025874 Length:583 Species:Drosophila melanogaster


Alignment Length:433 Identity:122/433 - (28%)
Similarity:166/433 - (38%) Gaps:117/433 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 QQNGQQNAGPANTNANEGGAGAN---------GSGG---VGGATGASVGVGSVGVTSGGRTGNGP 314
            ::|...|......::::...|:.         |.||   ||| ...|:.....||:..  |....
  Fly   194 EENDNNNTDSEREDSDQWTVGSTEDQDEPWIPGGGGRQTVGG-NNQSLLCTECGVSYS--TQKAL 255

  Fly   315 GR---PHK-----NKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSH 371
            .|   .||     .|||      .|..||:.|:..:.|..|.|.||..|||.|..|.|.:.....
  Fly   256 ARHVAKHKEQGDTQKPH------LCDFCGRGFRTNAQLTTHRRRHTGERPFKCPLCPKAYTHGPT 314

  Fly   372 LTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQ 436
            |..|:..|..||...||.|.::|..|..|..||:.|:||:|:.||:|.:.|.:.:.|..|.|.|:
  Fly   315 LKSHMHTHDEEKGHKCPQCDKTFYTRGNLRAHIQRHTGERPYKCPDCPQTFAKNSGLKLHSRLHK 379

  Fly   437 DVSPHLIFKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKDG 501
            :..|                                                         ||  
  Fly   380 EERP---------------------------------------------------------FK-- 385

  Fly   502 KGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQS 566
                                     |.:|.|.|.|...|:.|..:|...|.:.||:|.|.|.::|
  Fly   386 -------------------------CELCGKGFVQNQHLITHLRVHNGDRQFKCPDCDKSFFEKS 425

  Fly   567 HLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTH 631
            ::.:|.|.|:..|||.|..|.:.|.....|..|||||||||||||.||||.|.....|.:||..|
  Fly   426 NMMKHQRTHSGIKPFKCEECGQAFSHNHHLKSHLRIHTGEKPYKCDQCGKGFSANQSLMKHTLWH 490

  Fly   632 --QGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTTKVRRQ 672
              ..||||.|  ..|.:.:.|:..:..|...|.||:..|...|
  Fly   491 VDNNDRPFKC--SQCPKAYDTQQSLRGHEKTHKNPDEPKTLHQ 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 92/312 (29%)
C2H2 Zn finger 359..379 CDD:275368 5/19 (26%)
C2H2 Zn finger 387..407 CDD:275368 8/19 (42%)
C2H2 Zn finger 415..435 CDD:275368 7/19 (37%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 9/19 (47%)
C2H2 Zn finger 639..661 CDD:275368 4/21 (19%)
MeicsNP_524062.1 zf-AD 20..95 CDD:462262
C2H2 Zn finger 242..262 CDD:275368 4/21 (19%)
C2H2 Zn finger 274..294 CDD:275368 7/19 (37%)
SFP1 <296..374 CDD:227516 28/77 (36%)
COG5048 <299..486 CDD:227381 77/270 (29%)
C2H2 Zn finger 302..322 CDD:275368 5/19 (26%)
C2H2 Zn finger 330..350 CDD:275368 8/19 (42%)
C2H2 Zn finger 358..378 CDD:275368 7/19 (37%)
C2H2 Zn finger 386..406 CDD:275368 7/19 (37%)
COG5048 <395..583 CDD:227381 56/139 (40%)
C2H2 Zn finger 414..434 CDD:275368 8/19 (42%)
C2H2 Zn finger 442..462 CDD:275368 7/19 (37%)
C2H2 Zn finger 470..486 CDD:275368 7/15 (47%)
C2H2 Zn finger 500..520 CDD:275368 4/21 (19%)
C2H2 Zn finger 532..552 CDD:275370 122/433 (28%)
C2H2 Zn finger 559..579 CDD:275370
Blue background indicates that the domain is not in the aligned region.

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