DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and Gzf1

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:NP_001101258.1 Gene:Gzf1 / 311508 RGDID:1562321 Length:707 Species:Rattus norvegicus


Alignment Length:718 Identity:167/718 - (23%)
Similarity:266/718 - (37%) Gaps:184/718 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 SEMYPNIQQQAQQHLTAQQQQQQQQQNAAQAAAQAAAVAAAAGQPQSPPGGGQEARDNGSGDGRQ 124
            ||....:::|..:.:..:.|...:.|..  .|:....|:.......|.| .|::|..||..|   
  Rat   122 SETCLQLKKQMLESVLLELQNFSESQEV--EASSGPQVSVTPSSKASVP-AGEDAHSNGLVD--- 180

  Fly   125 QQVSPSSSPYPSVQQQQRANGAGDEDP---MNHQLANQQN----PAPNQNQSSNDPQHSGSNAGE 182
                  ||.||.   ::..||...|.|   ...:|..:::    |.|...::      ||..||:
  Rat   181 ------SSDYPI---ERLGNGLSPETPSKKCKEKLDKKKDVAKPPFPKIRRA------SGRLAGK 230

  Fly   183 SGNPHVQQNGGPQNDPGNSFRTPDYYDPRHAAPQGGMLAPPGFPPLHYLNKGVLPMEQSGGGGGA 247
            .....:         |...: |....:.:.:|.:..             .....|.:||...   
  Rat   231 KVFVEI---------PKKKY-TRRLREQQKSAEEAA-------------KNDKCPQDQSPDN--- 269

  Fly   248 GGGEAYALPEMLPAQQNGQQNAGPANTNANEGGAGANGSGGVGGATGASVGVGSVGVTSGGRTGN 312
                     |.:.|:...:..|.||:....|                      |:....|.:. .
  Rat   270 ---------ERVEAEPASKSEACPASVEREE----------------------SLQKVEGEKE-E 302

  Fly   313 GPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARP---FPCSECGKRFRQQSHLTQ 374
            ..|:..:.|..|:   |:|..|.|.|..:.:.|:|.:.|.....   :.|..||:.|..:.:|..
  Rat   303 EEGKDGEEKKKSN---FQCTVCDKAFLYEKSFLKHIKYHHGVATEVVYRCDTCGQTFANRCNLKS 364

  Fly   375 HLR-IHANEKPFTCPYCSRSFRQRAILNQHI-RIH-SGEKPFACPECGKHFRQKAILNQHVRTHQ 436
            |.| :|::|:.|.|..|::.|:::..:.:|: ::| .|.:...|.:|||....|..|..|.||| 
  Rat   365 HQRHVHSSERHFPCEMCAKKFKRKKDVKRHVLQVHEGGGERHRCGQCGKGLSSKTALRLHERTH- 428

  Fly   437 DVSPHLIFKNGPHPTLWPSDVPFPGEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSYFKDG 501
                             ..|.|:.....|.|                        ...||..|  
  Rat   429 -----------------TGDKPYGCTKCDAK------------------------FSQPSALK-- 450

  Fly   502 KGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQS 566
                  ..:..|.|.||     :| |..|...|.|...|:.|...|...||:.|..|||.|..:.
  Rat   451 ------THLRVHTGERP-----FV-CDECGARFTQNHMLIYHKRCHTGERPFMCETCGKSFASKE 503

  Fly   567 HLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQHTRTH 631
            :|..|.||||..|||.|..|.|.|.||..|.||:::||||:||.|.||||.|.|...|.:|.|.|
  Rat   504 YLKHHNRIHTGSKPFKCEVCLRTFAQRNSLYQHIKVHTGERPYCCDQCGKQFTQVNALQRHHRIH 568

  Fly   632 QGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTT----KVRRQQQQQHQQQQQQQQQQQQQQQ 692
            .|::|:.|..  |.|.|..::.:.:|...| :.||.    .|......::.:.|:.:|..::.  
  Rat   569 TGEKPYMCNA--CGRTFTDKSTLRRHTSIH-DKNTPWKSFLVIVDGSPKNDEGQKTEQPDEEY-- 628

  Fly   693 QQNNNAVAQVANHLMNDAKSLAAQQFLNN------NNPSAVDNKANILPVRSIASNAAAAAVVQQ 751
                 |..::::.|:    |.......||      |.|:..:|.         :::.|..|||.|
  Rat   629 -----ASPKLSDRLL----SFGENSHFNNLLEVQGNVPAVQENS---------STDTACKAVVSQ 675

  Fly   752 SVV 754
            ..:
  Rat   676 DAL 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 6/19 (32%)
COG5048 355..666 CDD:227381 95/316 (30%)
C2H2 Zn finger 359..379 CDD:275368 7/20 (35%)
C2H2 Zn finger 387..407 CDD:275368 4/20 (20%)
C2H2 Zn finger 415..435 CDD:275368 8/19 (42%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
C2H2 Zn finger 555..575 CDD:275368 8/19 (42%)
C2H2 Zn finger 583..603 CDD:275368 9/19 (47%)
C2H2 Zn finger 611..631 CDD:275368 10/19 (53%)
C2H2 Zn finger 639..661 CDD:275368 5/21 (24%)
Gzf1NP_001101258.1 BTB_POZ 6..133 CDD:453885 3/10 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 149..221 20/86 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 243..309 13/113 (12%)
C2H2 Zn finger 318..338 CDD:275370 6/19 (32%)
C2H2 Zn finger 349..370 CDD:275368 7/20 (35%)
C2H2 Zn finger 408..428 CDD:275368 8/19 (42%)
COG5048 <411..539 CDD:227381 53/183 (29%)
C2H2 Zn finger 436..456 CDD:275368 5/51 (10%)
C2H2 Zn finger 464..484 CDD:275368 6/19 (32%)
C2H2 Zn finger 492..512 CDD:275368 8/19 (42%)
C2H2 Zn finger 520..540 CDD:275368 9/19 (47%)
zf-H2C2_2 532..557 CDD:463886 15/24 (63%)
C2H2 Zn finger 548..568 CDD:275368 10/19 (53%)
zf-H2C2_2 560..584 CDD:463886 9/25 (36%)
zf-C2H2 574..596 CDD:395048 5/23 (22%)
C2H2 Zn finger 576..596 CDD:275368 5/21 (24%)

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