DRSC/TRiP Functional Genomics Resources

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Protein Alignment jim and si:ch1073-127d16.1

DIOPT Version :10

Sequence 1:NP_001262221.1 Gene:jim / 43924 FlyBaseID:FBgn0027339 Length:938 Species:Drosophila melanogaster
Sequence 2:XP_021323944.1 Gene:si:ch1073-127d16.1 / 101883863 ZFINID:ZDB-GENE-120214-30 Length:454 Species:Danio rerio


Alignment Length:364 Identity:134/364 - (36%)
Similarity:191/364 - (52%) Gaps:36/364 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 KN--KPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHAN 381
            ||  |.|:....|.|..|.|.|..|.:|..|.:|||..:||.|.:|||:||.:..|..|||||..
Zfish    70 KNHMKIHTGAHPFTCPECDKCFTMKHSLETHLKIHTGEKPFTCPDCGKKFRLKQSLDGHLRIHTG 134

  Fly   382 EKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKN 446
            |||:||..|.||||::.||::|:.||:||||::||||||.||.|..|..|::.|....|:...:.
Zfish   135 EKPYTCQVCGRSFREKQILDKHLTIHTGEKPYSCPECGKSFRVKNCLENHIKIHTGEKPYTCQEC 199

  Fly   447 GP----------HPTLWPSDVPFP----GEDNDTKGDIAGTGGGYHDEDSQGTPDGSGGMHYPSY 497
            |.          |..:...:.||.    |.....|.|:.     .|.....|....|......|:
Zfish   200 GKSFTEKQNLERHIRIHTGEKPFACPECGRSFRVKQDLK-----IHLRIHTGEKPFSCQQCGKSF 259

  Fly   498 FKDGKGQKILPEVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRF 562
               .:.:|:...:..|.|.:|     :| |..|.|.|:.|..|..|..:|..::||.||:|||.:
Zfish   260 ---SENKKLENHMRIHTGEKP-----FV-CSHCGKNFRGKQNLESHMRLHTGNQPYTCPQCGKSY 315

  Fly   563 RQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCGQCGKDFRQKAILDQH 627
            .||..|..|:|.||.||||.|..|.:.|.|::.|..|::|||||||:.|.||||.|.:|..|::|
Zfish   316 NQQKSLQIHIRTHTGEKPFACDQCGKSFTQQSTLKGHIKIHTGEKPFTCPQCGKSFIEKTKLERH 380

  Fly   628 TRTHQGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNT 666
            .:.|.|::.:.|  .:|::.|.    :.:.:|.||..:|
Zfish   381 KKIHSGEKAYTC--QHCKKSFT----LKQSLDIHMRIHT 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
jimNP_001262221.1 C2H2 Zn finger 331..351 CDD:275368 7/19 (37%)
COG5048 355..666 CDD:227381 118/324 (36%)
C2H2 Zn finger 359..379 CDD:275368 10/19 (53%)
C2H2 Zn finger 387..407 CDD:275368 9/19 (47%)
C2H2 Zn finger 415..435 CDD:275368 11/19 (58%)
C2H2 Zn finger 527..547 CDD:275368 7/19 (37%)
C2H2 Zn finger 555..575 CDD:275368 10/19 (53%)
C2H2 Zn finger 583..603 CDD:275368 6/19 (32%)
C2H2 Zn finger 611..631 CDD:275368 9/19 (47%)
C2H2 Zn finger 639..661 CDD:275368 4/21 (19%)
si:ch1073-127d16.1XP_021323944.1 COG5048 36..445 CDD:227381 134/364 (37%)
C2H2 Zn finger 56..76 CDD:275368 3/5 (60%)
C2H2 Zn finger 84..104 CDD:275368 7/19 (37%)
C2H2 Zn finger 112..132 CDD:275368 10/19 (53%)
C2H2 Zn finger 140..160 CDD:275368 9/19 (47%)
C2H2 Zn finger 168..188 CDD:275368 11/19 (58%)
C2H2 Zn finger 196..216 CDD:275368 2/19 (11%)
C2H2 Zn finger 224..244 CDD:275368 4/24 (17%)
C2H2 Zn finger 252..272 CDD:275368 2/22 (9%)
C2H2 Zn finger 280..300 CDD:275368 7/19 (37%)
C2H2 Zn finger 308..328 CDD:275368 10/19 (53%)
C2H2 Zn finger 336..356 CDD:275368 6/19 (32%)
C2H2 Zn finger 364..384 CDD:275368 9/19 (47%)
C2H2 Zn finger 392..412 CDD:275368 6/25 (24%)
C2H2 Zn finger 420..440 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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