DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ret and Fgfr4

DIOPT Version :10

Sequence 1:NP_477044.1 Gene:Ret / 43875 FlyBaseID:FBgn0011829 Length:1235 Species:Drosophila melanogaster
Sequence 2:XP_006253668.1 Gene:Fgfr4 / 25114 RGDID:2612 Length:801 Species:Rattus norvegicus


Alignment Length:387 Identity:160/387 - (41%)
Similarity:221/387 - (57%) Gaps:42/387 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   704 LLFVLLLLCLLIAQRKMLQRRLGKQSMTTSSKQALP-------ESGGGDFALMPLQSGFRFESG- 760
            |..|||||...:..|:.:.....:|.:|.......|       ||.....:.:.|..|.|..|. 
  Rat   377 LALVLLLLLAGVYHRQAIHGHHSRQPVTVQKLSRFPLARQFSLESRSSGKSSLSLVRGVRLSSSG 441

  Fly   761 --------------DAKWEFPREKLQLDTVLGEGEFGQVLKGFATEIAGLPG-----ITTVAVKM 806
                          |..|||||::|.|...||||.||||::   .|..|:..     .:||||||
  Rat   442 PPLLTGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVR---AEALGMDSSRPDQTSTVAVKM 503

  Fly   807 LKKGSNSVEYMALLSEFQLLQEVS-HPNVIKLLGACTSSEAPL-LIIEYARYGSLRSYLRLSRKI 869
            ||..::..:...|:||.::::.:. |.|:|.|||.|| .|.|| :|:|||..|:||.:||..|. 
  Rat   504 LKDNASDKDLADLISEMEMMKLIGRHKNIINLLGVCT-QEGPLYVIVEYAAKGNLREFLRARRP- 566

  Fly   870 ECAGVDFA-DGVE----PVNVKMVLTFAWQICKGMAYLSELKLVHRDLAARNVLLADGKICKISD 929
              .|.|.: ||..    |::...:::.|:|:.:||.||...|.:||||||||||:.:..:.||:|
  Rat   567 --PGPDLSPDGPRSSEGPLSFPALVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDDVMKIAD 629

  Fly   930 FGLTRDVYEDDAYLKRSRDRVPVKWMAPESLADHVYTSKSDVWSFGVLCWELITLGASPYPGIAP 994
            |||.|.|:..|.|.|.|..|:||||||||:|.|.|||.:|||||||:|.||:.|||.||||||..
  Rat   630 FGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGIPV 694

  Fly   995 QNLWSLLKTGYRMDRPENCSEAVYSIVRTCWADEPNGRPSFKFLASEFEK-LLGNNAKYIDL 1055
            :.|:|||:.|:||:||.||...:|.::|.||...|:.||:||.|....:| ||..:.:|:||
  Rat   695 EELFSLLREGHRMERPPNCPSELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAVSEEYLDL 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RetNP_477044.1 Protein Kinases, catalytic domain 770..1049 CDD:473864 135/291 (46%)
Fgfr4XP_006253668.1 Ig 33..101 CDD:472250
Ig strand B 50..54 CDD:409549
Ig strand E 81..85 CDD:409549
Ig strand F 95..100 CDD:409549
Ig 143..237 CDD:472250
Ig strand B 164..168 CDD:409443
Ig strand C 177..181 CDD:409443
Ig strand E 203..207 CDD:409443
Ig strand F 217..222 CDD:409443
Ig strand G 230..233 CDD:409443
Ig 245..347 CDD:472250
Ig strand B 263..267 CDD:409444
Ig strand C 276..280 CDD:409444
Ig strand E 312..316 CDD:409444
Ig strand F 326..331 CDD:409444
Ig strand G 339..342 CDD:409444
Protein Kinases, catalytic domain 453..766 CDD:473864 144/311 (46%)
Blue background indicates that the domain is not in the aligned region.

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