DRSC/TRiP Functional Genomics Resources

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Protein Alignment amx and Tm2d1

DIOPT Version :10

Sequence 1:NP_524644.1 Gene:amx / 43869 FlyBaseID:FBgn0000077 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001102140.1 Gene:Tm2d1 / 362545 RGDID:1305442 Length:208 Species:Rattus norvegicus


Alignment Length:138 Identity:48/138 - (34%)
Similarity:66/138 - (47%) Gaps:23/138 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 CYQTEMWQQSCGQRSSCNSATDKLFR-TNCTVHHDVLCL-----------GNRS--------FTR 211
            |....:.|..| :....|.||.:... ||.|.|  |.|.           ||.:        |.:
  Rat    49 CEDLRVGQYIC-KEPKINDATQEPVNCTNYTAH--VQCFPAPNITCKDLSGNETHFTGSEVGFLK 110

  Fly   212 NLRCNWTQGYRWSTALLISLTLGGFGADRFYLGHWQEGIGKLFSFGGLGVWTIIDVLLISMHYLG 276
            .:.|....||.:..|:.:||.||..||||||||:...|:.|..:.|..|:.::||.:||||..:|
  Rat   111 PISCRNVNGYSYKVAVALSLFLGWLGADRFYLGYPALGLLKFCTVGFCGIGSLIDFVLISMQIVG 175

  Fly   277 PADGSLYI 284
            |:|||.||
  Rat   176 PSDGSSYI 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amxNP_524644.1 TM2 219..268 CDD:428337 21/48 (44%)
Tm2d1NP_001102140.1 TM2 118..167 CDD:428337 21/48 (44%)

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