DRSC/TRiP Functional Genomics Resources

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Protein Alignment amx and amrt

DIOPT Version :10

Sequence 1:NP_524644.1 Gene:amx / 43869 FlyBaseID:FBgn0000077 Length:284 Species:Drosophila melanogaster
Sequence 2:NP_001033842.2 Gene:amrt / 32342 FlyBaseID:FBgn0030522 Length:224 Species:Drosophila melanogaster


Alignment Length:231 Identity:68/231 - (29%)
Similarity:98/231 - (42%) Gaps:72/231 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 VSSMV---AKSGGGAGGLLDNITAYSSSSSSSSSNG---------NNNMLCPY------DKETPC 118
            |.|:|   |:.|.|.|      .:.||||:||:|.|         ..|::|.:      |.:.|.
  Fly    39 VQSVVPVQAQLGSGMG------PSSSSSSASSASGGAGNSAFYPLGPNVMCSFLPRDFLDCKDPV 97

  Fly   119 DRLQFPCIRCNYNHGCI-YGRDLNVTCEVINNVQCLGERSFQRQMNCRYCYQTEMWQQSCGQRSS 182
            |..:....:....:||: :|   ..|.|.:.:..                    :|         
  Fly    98 DHRENATAQQEKKYGCLKFG---GSTYEEVEHAM--------------------VW--------- 130

  Fly   183 CNSATDKLFRTNCTVHHDVLCLGNRSFTR-NLRC-NWTQGYRWSTALLISLTLGGFGADRFYLGH 245
                        |||..|:.|.|||:|.| .:.| .:|..| :.|.|:.|:.||..|.|||.||.
  Fly   131 ------------CTVFADIECYGNRTFLRAGVPCVRYTDHY-FVTTLIYSMLLGFLGMDRFCLGQ 182

  Fly   246 WQEGIGKLFSFGGLGVWTIIDVLLISMHYLGPADGS 281
            ....:|||.:.||:|||.||||:|:..:.|.|.|||
  Fly   183 TGTAVGKLLTMGGVGVWWIIDVILLITNNLLPEDGS 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amxNP_524644.1 TM2 219..268 CDD:428337 23/48 (48%)
amrtNP_001033842.2 TM2 156..205 CDD:428337 24/49 (49%)

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