DRSC/TRiP Functional Genomics Resources

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Protein Alignment HnRNP-K and pcbp2

DIOPT Version :10

Sequence 1:NP_995906.1 Gene:HnRNP-K / 43862 FlyBaseID:FBgn0267791 Length:502 Species:Drosophila melanogaster
Sequence 2:NP_001039068.1 Gene:pcbp2 / 733863 -ID:- Length:362 Species:Xenopus tropicalis


Alignment Length:393 Identity:86/393 - (21%)
Similarity:128/393 - (32%) Gaps:162/393 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVI 167
            :||::..|..|.:|||||.||||||:..|.: ::|..::.|.||:|.|...|....:|:.|:::.
 Frog    14 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQ-VQVAGDMLPNSTERAVTISGTPDAIIQCVKQIC 77

  Fly   168 TLTRDTPIKGAIHNYDPMNFDRVYADEYGGYGTGSGSTRPSQRGNNRNGGGAGGVAGGAAGGNGG 232
            .:..::|.|||...|.|                     :|                         
 Frog    78 VVMLESPPKGATIPYRP---------------------KP------------------------- 96

  Fly   233 GFNAGGARGNAGGRGGADRFGGAAGGAVAGAGMGQRDNPFINPWANGGGGDVDGFGNNAGGAGGF 297
               |.|....|||:..|:....:||.....|    :..|                      |..|
 Frog    97 ---ASGPIIFAGGQVRAETILASAGNHTVLA----QPQP----------------------APAF 132

  Fly   298 AGNSFGGGAGGPFGGGSFGNNGFGGGPSDFGGNSGNFGQAQGTNSLPSLGSFSQNQGGTSSLPSL 362
            |                                      .||..::|.......:|......| .
 Frog   133 A--------------------------------------IQGQYAIPHPDLTKLHQLAMQHTP-F 158

  Fly   363 GSFGQ-NPGGPGGLGNGLSGGANGGVGTLGGANGAGGFNAVGGANGGPNGSPNAATNVPQGHDPN 426
            ...|| .||.|                         |.:|.                     .|.
 Frog   159 TPLGQTTPGFP-------------------------GLDAT---------------------SPT 177

  Fly   427 NSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLLQ 491
            :|.::|||.:|.|.|||:.|.:|..||..|.|.|.|......:.:|.:||:|:|..|.:||||:.
 Frog   178 SSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANASEGNGERQVTITGSPANISLAQYLIN 242

  Fly   492 QSV 494
            .|:
 Frog   243 ASL 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HnRNP-KNP_995906.1 KH-I_HNRNPK_rpt1 28..91 CDD:411860
KH-I_HNRNPK_rpt2 100..170 CDD:411861 25/66 (38%)
KH-I_HNRNPK_rpt3 426..498 CDD:411862 28/69 (41%)
pcbp2NP_001039068.1 KH-I_PCBP3_rpt2 7..85 CDD:411947 25/71 (35%)
KH-I 170..244 CDD:469614 30/94 (32%)
Blue background indicates that the domain is not in the aligned region.

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