DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATPsynbeta and Kdm5c

DIOPT Version :10

Sequence 1:NP_001259081.1 Gene:ATPsynbeta / 43829 FlyBaseID:FBgn0010217 Length:511 Species:Drosophila melanogaster
Sequence 2:NP_001390000.1 Gene:Kdm5c / 20591 MGIID:99781 Length:1554 Species:Mus musculus


Alignment Length:543 Identity:99/543 - (18%)
Similarity:162/543 - (29%) Gaps:204/543 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 DNLPPILNALEVDNRS-------PRLVLEV----AQHLGENTVRTIAMDGTE------------- 100
            |.||.:|:.|:|...|       .|:.|||    .:.|.|  :|.:..:..|             
Mouse   754 DELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEE--LRALESEARERRFPNSELLQRLK 816

  Fly   101 --------------GLVRGQKVLDTGYPIRIPVGAETLGRIINVIGE----PI------DERG-- 139
                          |||.||   :.| |.|:.....||..:.:.:|:    |.      |.:|  
Mouse   817 NCLSEAEACVSRALGLVSGQ---EAG-PDRVAGLQMTLAELRDFLGQMNNLPCAMHQIGDVKGIL 877

  Fly   140 -PIDTDKTAAIHA-----------------------EAPEF--VQMSVEQEILVTGIKVVDLLAP 178
             .::..:|.|..|                       |.||.  :|..|||...:..:|  ..|||
Mouse   878 EQVEAYQTEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVK--RTLAP 940

  Fly   179 YAKGGKIG-----LFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYNEMIEGGV 238
            .|:.|.:.     |..||.|..:..       |.||.........:.||..|...|..|      
Mouse   941 SARRGTLAIMRGLLVAGASVAPSPA-------VDKAQAELQELLTIAERWEEKAHLCLE------ 992

  Fly   239 ISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSA 303
                          .:...||.....:.            .|.:::.:.:.||....:|.::..|
Mouse   993 --------------ARQKHPPATLEAII------------HEAENIPVHLPNIQSLKEALAKARA 1031

  Fly   304 LLGRIPS-----------------AVGYQ-PTLATDMGSMQERITTT------------KKGSIT 338
            .:..:..                 |||.. |....::..::.::.|.            ||.|..
Mouse  1032 WIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCY 1096

  Fly   339 SVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNV 403
            ::..:..|..|          |..|:|........|||:|.:           |..::|      
Mouse  1097 TLLEVLCPCAD----------AGSDSTKRSRWMEKELGLYKS-----------DTELLG------ 1134

  Fly   404 ARGVQKILQDYKSLQDI----IAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKL 464
                       .|.||:    ..|:...|..:::|..:.:.|:.......|..:....:..|...
Mouse  1135 -----------LSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLALLTTASSTASIC 1188

  Fly   465 VPLEQTIKGFSAI---LAGDYDH 484
            | ..|...|..|:   |..|:.|
Mouse  1189 V-CGQVPAGVGALQCDLCQDWFH 1210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATPsynbetaNP_001259081.1 AtpD 44..510 CDD:439825 99/543 (18%)
Kdm5cNP_001390000.1 JmjN 13..54 CDD:128818
ARID_KDM5C_5D 79..170 CDD:350639
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 197..227
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 284..303
PHD1_KDM5C_5D 326..371 CDD:277077
JmjC 501..617 CDD:396791
zf-C5HC2 707..759 CDD:460750 3/4 (75%)
PLU-1 772..1100 CDD:462475 65/374 (17%)
PHD_SF 1187..1247 CDD:473978 7/25 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1319..1364
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1437..1535
Blue background indicates that the domain is not in the aligned region.

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