DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and grid2

DIOPT Version :10

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001004123.1 Gene:grid2 / 448841 ZFINID:ZDB-GENE-040913-1 Length:1009 Species:Danio rerio


Alignment Length:911 Identity:249/911 - (27%)
Similarity:444/911 - (48%) Gaps:154/911 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLFQFLSYGLGVPP-----LVRIGAIFSNQPGMYNSELAFRYAIHRLNMDKSLLPETTVDYYVEY 67
            :||....:.|...|     ::.||||| ::....:.|: ||.|:..||::..:|....:...||:
Zfish     7 VLFLITFWSLEWEPVLPDSIIHIGAIF-DESAKKDDEV-FRMAVADLNLNNEILETEKITVSVEF 69

  Fly    68 VNRFDSFETVQKVCKLIRVGVQAVFSPTDSVLATHINSICDALDIPNI---------GRSA---- 119
            |:..:.|:.||:.|:|:..|:.|:.|....:.|..:.|:.||:.||::         .||:    
Zfish    70 VDGNNPFQAVQEACELMNRGILALVSSIGCMSAGSLQSLADAMHIPHLFIQRAPAGTPRSSCPPT 134

  Fly   120 -----HDFSINVYPSKQLVNYAFNDVIQYLNWTRFGILHEKE---NGIIN-LHQLSRSFHGEVHM 175
                 .|:::.|.|...|.:..|..|::| .|.:|.|.::.:   .||.| |.|.|:        
Zfish   135 TRAQPDDYTLFVRPPVYLNDVIFQVVMEY-TWQKFIIFYDTDYDIRGIENFLDQTSQ-------- 190

  Fly   176 RQVSRDSYVSALNEFKGKEIHNIIIDTNSN-GISILLKNILQQQMNEY----KYHYLFTS----- 230
                           :|.::....:::|.| .|:.:.:.:..::::.|    :...||.|     
Zfish   191 ---------------QGMDVSLQKVESNINMMITGMFRTMRVEELHRYRDTLRRAVLFMSPATAK 240

  Fly   231 -FDLETYDLE----DFKYNFVNITSFRLVDTADVGVKQ-ILKDIG-------------------L 270
             |..|..:..    |.::..:|      .:.:|:.|:: ::|.||                   :
Zfish   241 AFITEVVETNLVAFDCQWIIIN------EEISDMDVQELVMKSIGRLTLVRQTFPLPQNTSQRCV 299

  Fly   271 YSHHIFKKPYLNLHIKKSTILESEPALMFDSVYVFAIGL-QTLEQSHSLTLLNISCEEENS--WD 332
            .::|.......:....|:.:||.....::|:|.:.|... :.||.....::.::||..:.|  |.
Zfish   300 RNNHRINTSLCDPKDPKAQMLEITNRYIYDTVLLLANTFHRKLEDRKWHSMASLSCIRKGSKPWQ 364

  Fly   333 GGLSLINYLNAVEWKGLTGPIQFKD-GQRVQFKLDLI-----KLKQHSIVKVGEWTP-HGHLNIT 390
            ||.|::..:......|||..::|.| |.......:::     :.:...:.::..|.| || ||.|
Zfish   365 GGKSMLETVKKGGVSGLTSLLEFNDNGSNPNIHFEILGTNYGEDRGRGVSRLATWDPIHG-LNGT 428

  Fly   391 EPSMFFDAGSMNVTLVVITILETPYVMMHYGKNFTGN-ERFYGFCVDILETISREVGFDYILDLV 454
            ......:.....|.|.|:|:||.|:||:  .:|..|. :::.||.:|:|:.::..:||.|.:.:.
Zfish   429 LTDRKLENNMRGVVLRVVTVLEEPFVMV--SENVLGKPKKYQGFSIDVLDALANYLGFKYEIYVA 491

  Fly   455 PDRKYGAKDPETGEWNGMVAQLMKYKADLAVGSMTITYARESVIDFTKPFMNLGISILFKVPTSE 519
            ||.|||::..: |.|||::.:|:..:||:.:.::|||..||||:|||..:|:..:.:|.: ....
Zfish   492 PDHKYGSQQAD-GTWNGLIGELVFKRADVGLSALTITPERESVVDFTTRYMDYSVGVLLR-KAER 554

  Fly   520 PTRLFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLT--DS 582
            ...:|:.:.|..:.:|..:.....||...:|::..|:|           ..:.:|:..|.|  :|
Zfish   555 TVDMFACLAPFDLSLWACIAGTVLLVGTLVYLLNWLNP-----------PRLPMGSVSSTTLYNS 608

  Fly   583 FWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLAS 647
            .||..|:|:||..::....::||::...|..|:||:::|||||||||||..|:.|.|::.:|||.
Zfish   609 MWFVYGSFVQQGGEVPYTTLATRMMMGVWWLFALIVISSYTANLAAFLTISRIENSIQSLQDLAK 673

  Fly   648 QTEISYGT-LDSG--------STMTFFRDSVIETYKKIWRSMDNKKPSAFTTTYE--DGIKRVNQ 701
            ||::.||| |||.        ....|.||.:   |.::|| |.|:...|.....|  :||::|..
Zfish   674 QTDLPYGTVLDSAVYDQVRSKGMNPFERDPM---YSQMWR-MINRTGGAENNVEESKEGIRKVKY 734

  Fly   702 GNYAFLMESTMLDYIV--QRDCNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQM 764
            |.:||:.::.:|:|:.  ..||:|..:...:..:|||:|...|||:||..|..|||||:.||:.:
Zfish   735 GRFAFVWDAAVLEYVAINDEDCSLYTVSNNVADRGYGMAMQHGSPYRDIFSQRILELQQNGDMDI 799

  Fly   765 LYDKWWKNTDETC-------TRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNF 822
            |..|||.. |..|       |||:.|      :|.:.|..|||.||.||::::.::|..|.|:..
Zfish   800 LKLKWWPR-DSPCDLYSPVGTRKSGS------ALDIHSFAGVFFVLAAGVVLSCLIATVETWWTR 857

  Fly   823 R 823
            |
Zfish   858 R 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..390 CDD:380605 92/432 (21%)
PBP2_iGluR_Kainate 402..771 CDD:270432 132/384 (34%)
Lig_chan 532..806 CDD:459656 102/295 (35%)
grid2NP_001004123.1 PBP1_iGluR_delta_2 28..429 CDD:380614 92/433 (21%)
PBP2_iGluR_delta_2 440..806 CDD:270449 132/384 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 989..1009
Blue background indicates that the domain is not in the aligned region.

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