DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Ir85a

DIOPT Version :10

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_649833.1 Gene:Ir85a / 41052 FlyBaseID:FBgn0037630 Length:605 Species:Drosophila melanogaster


Alignment Length:434 Identity:75/434 - (17%)
Similarity:140/434 - (32%) Gaps:152/434 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   476 LMKYKADLAVGSMTIT----YARESV------IDFTKPFMNLGISILFKVP---------TSEPT 521
            |..|.|:....:|.||    |...::      ::..|.::::.::|.|.||         |...|
  Fly   232 LAAYVAERLNATMMITRPHSYNNHNLSSDICFLEVAKEYVDVAMNIRFLVPDTFRKQAESTVSHT 296

  Fly   522 R---------------LFSFMNPLAIEIWIYVLIAYFLVSLCIYI----VGKLSPIEWKCINACD 567
            |               .::........:|..:|::..:.::..||    ||:: |::        
  Fly   297 RDDLCVIVPKAKTAPTFWNIFRSFGSLVWALILVSVLVANVFCYILKSEVGRV-PMQ-------- 352

  Fly   568 LENISIGNQFSLTDSFWFTIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTT 632
                             ...|........|.|. .|.|:....|.:|.|:|.:::..||.:.:..
  Fly   353 -----------------LFAGALTMPMTQIPPN-HSIRLFLIFWLYFGLLICSAFKGNLTSMMVF 399

  Fly   633 ERMINPIENAEDLA-------------------------SQTEISYGTLDSGSTMTFFRDSVIET 672
            :..:..|.....||                         .::.|....|:...|..:        
  Fly   400 QPYLPDINQLGALARSHYHIIIRPRHVKHIQHFLTLGHKHESRIREQMLEVSDTQMY-------- 456

  Fly   673 YKKIWRSMDNKKPSAFTTTYEDGIKRVNQ------GNYAF-LMESTMLD----YIVQRDCNLTQI 726
              ::.|:.|.:  .|:...|.....:||.      |...| ||.|.::.    |||         
  Fly   457 --EMMRNNDIR--FAYLEKYHIARFQVNSRVHMHLGRPLFHLMNSCLVPFHAVYIV--------- 508

  Fly   727 GGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYDKWW---------KNTDETCTRKNT 782
                         |.|||:     |..|:...|...:..::::|         |:..:...|:..
  Fly   509 -------------PYGSPY-----LGFLDSLIRSSHEFGFERYWDRIMNSAFIKSGVKVVNRRRG 555

  Fly   783 SKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEFWYNFRYNY 826
            |...:...|.|:....||.:.:.||.:|.:|.   .|.:..:||
  Fly   556 SGNDEPVVLKLQHFHAVFALWLVGIGMACIVL---AWEHLTHNY 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..390 CDD:380605
PBP2_iGluR_Kainate 402..771 CDD:270432 61/377 (16%)
Lig_chan 532..806 CDD:459656 53/322 (16%)
Ir85aNP_649833.1 None
Blue background indicates that the domain is not in the aligned region.

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