DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and Ir75c

DIOPT Version :10

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_649013.3 Gene:Ir75c / 39983 FlyBaseID:FBgn0261401 Length:623 Species:Drosophila melanogaster


Alignment Length:381 Identity:65/381 - (17%)
Similarity:148/381 - (38%) Gaps:51/381 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   467 GEWN------GMVAQLMKYKADLAVGSMTITYARESVIDFTKPF---MNLGISILFKVPTSEPTR 522
            |.|:      |.:..|....|:|.......::.|   :.:..|.   .......:|:.|.:...:
  Fly   256 GTWSVQDAFGGAIGMLTNESAELCTTPFVPSWNR---LHYLHPMTEQAQFRAVCMFRTPHNAGIK 317

  Fly   523 LFSFMNPLAIEIWIYVLIAYFLVSLCIYIVGKLSPIEW--KCINACDLENISIGNQFSLTDSFWF 585
            ...|:.|....:|...........:.::::..|.. .|  :|::...          ||..|...
  Fly   318 AAVFLEPFMPSVWFAFAGLLIFAGVLLWMIFHLER-HWMQRCLDFIP----------SLLSSCLI 371

  Fly   586 TIGTFMQQSPDIYPRAMSTRIISSTWGFFSLIIVASYTANLAAFLTTERMINPIENAEDLA-SQT 649
            :.|....|...:.|::...|:........|.::...||:.:.:.|....:.:.|...:.|| |..
  Fly   372 SFGAACIQGSYLMPKSAGGRLAFIAVMLTSFLMYNYYTSIVVSTLLGSPVRSNIRTIQQLADSSL 436

  Fly   650 EISYGTLDSGSTMTFF----RDSVIETYKKIWRSMDNKK-PSAFTTTYEDGIKRV-NQGNYAFLM 708
            ::.:.|:.  .|.|:.    |..:...||   :.:::|: |::...:.|:|:.|| :|..:.:..
  Fly   437 DVGFDTVP--FTKTYLVSSPRPDIRSLYK---QKVESKRDPNSVWLSPEEGVIRVRDQPGFVYTS 496

  Fly   709 ESTMLDYIVQRD------CNLTQIGGLLDTKGYGIATPKGSPWRDKISLAILELQERGDIQMLYD 767
            |::.:.:.|::.      .:|.:|....::..||: ....|.:|..::...:.:.|.| |.....
  Fly   497 EASFMYHFVEKHYLPREISDLNEIILRPESAVYGM-VHLNSTYRQLLTQLQVRMLETG-ITSKQS 559

  Fly   768 KWWKNTDETCTRKNTSKQSKANSLGLESIGGVFVVLIAGIIVAAVVAFFEF-WYNF 822
            :::..     |:.:|...|....:|:|....:|:.|:....:|.::...|. |..:
  Fly   560 RFFSK-----TKLHTFSNSFVIQVGMEYAAPLFISLLVAYFLALLILILEICWARY 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..390 CDD:380605
PBP2_iGluR_Kainate 402..771 CDD:270432 55/327 (17%)
Lig_chan 532..806 CDD:459656 50/288 (17%)
Ir75cNP_649013.3 Lig_chan 328..>508 CDD:459656 34/195 (17%)
Blue background indicates that the domain is not in the aligned region.

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