DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ekar and F59E12.8

DIOPT Version :10

Sequence 1:NP_001036250.1 Gene:Ekar / 43806 FlyBaseID:FBgn0039916 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001364714.1 Gene:F59E12.8 / 186629 WormBaseID:WBGene00019123 Length:379 Species:Caenorhabditis elegans


Alignment Length:431 Identity:82/431 - (19%)
Similarity:150/431 - (34%) Gaps:123/431 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 MVAQLMKYKADLAVGSMTITYARESVIDFTKPF-MNLGISILFKVPTSEPTRLFSFMNPLAIEIW 535
            |:..:.|.:.|:|.|...:|..|.:|:.||.|. ..:....|...|......:|.| :|.:..:|
 Worm     1 MLGDIQKGRIDMACGRFRMTADRANVLTFTYPTQFEVNQVYLITDPQKSVDVVFLF-HPFSTTVW 64

  Fly   536 IYVLIAYFLVSLCIYIVGKLSPIEWKCINACDLENISIGNQFSLTDSFWFTIGTFMQQSPDIYPR 600
            :.:.:...:|::..:|   |..:|:|.....:.....|.|..     |...:.||   :.:|...
 Worm    65 LLLSLTVLVVAIVFFI---LRFVEFKSTKETESSYECIQNSI-----FQVLLSTF---NLEIRVA 118

  Fly   601 AMST----RIISSTW--GFFSLIIVASYTANLAAFL--TTERMINPIENAEDLASQTEISYGTLD 657
            ..||    .:.|:.|  .:|. :.:..||:.|:..:  :.:|.: |.:|          .||.:|
 Worm   119 KKSTFFAFHLFSTIWLLAWFH-VFIDFYTSELSGMMVVSDKRQV-PFDN----------FYGFID 171

  Fly   658 ---SGSTMTF--FRDSVIETYKKIWRSMDNKKPSAFTTTYEDGIKRVNQGNYAFLMESTMLDYIV 717
               .|:...|  ..|.:.|...:|..|..|...|...:.:..        .|..||:....:::.
 Worm   172 HLRKGNYRLFTPSADRIPECPHEITTSKCNAIFSEILSKHPP--------EYGDLMQLNDREFVS 228

  Fly   718 QRDCNLTQIGGLLDTKGYGIATPKGSPW------RDKISLAILELQERGDIQMLYD--------- 767
            .|...|.         |:|        |      ..|.|:...|| ...||.::.|         
 Worm   229 SRKIPLV---------GFG--------WYPAQRISSKFSIWTQEL-FHSDIWLIRDFPVCPAAYI 275

  Fly   768 -----KWWKNTDETCTR-------------------KNTSKQSKANSLGLESIGGVFVV------ 802
                 .:....:|...:                   ..|.|.|| :|..|..:..:|::      
 Worm   276 VRPTFPYLDELNEMIIKVLPAFSRIDNHYTPAYPELTLTGKPSK-SSFSLNQLSSIFLIHLLGAF 339

  Fly   803 -----LIAGIIVAAVVAFFEFWYNFRYNYEATPSQSVVNNK 838
                 |||.:::|.:..        |:|.::|....:.|:|
 Worm   340 VSTLFLIAELVIAELTK--------RHNIDSTLQTRLDNSK 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EkarNP_001036250.1 PBP1_iGluR_Kainate 24..390 CDD:380605
PBP2_iGluR_Kainate 402..771 CDD:270432 65/332 (20%)
Lig_chan 532..806 CDD:459656 59/336 (18%)
F59E12.8NP_001364714.1 None
Blue background indicates that the domain is not in the aligned region.

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