DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RunxA and runx2a

DIOPT Version :9

Sequence 1:NP_001259747.1 Gene:RunxA / 4379817 FlyBaseID:FBgn0083981 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_998023.1 Gene:runx2a / 405784 ZFINID:ZDB-GENE-040629-3 Length:467 Species:Danio rerio


Alignment Length:498 Identity:165/498 - (33%)
Similarity:211/498 - (42%) Gaps:163/498 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 SNTEQNTPPTPAQLLNEAYTKMTSDILAE-------------RTLGDFLTEHPGELIRTSSPLFV 108
            |.:.:.:||:.:  |.....|| ||...|             ||:.:.:.:||.||:||.||.|:
Zfish    22 STSRRFSPPSSS--LQPVAGKM-SDAQPEPNAVVPRLRPHDNRTMVEIIADHPAELVRTDSPNFL 83

  Fly   109 CTVLPPHWRSNKTLPVAFKVVSLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRF 173
            |:|||.|||.|||||||||||:|||:.|||:|||.|||||||.|||||.:||||||||:||||||
Zfish    84 CSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLRF 148

  Fly   174 VGRSGRGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPR------------------------ 214
            ||||||||||||||||.||||.:|||::|||||||||||||                        
Zfish   149 VGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHRQKLEDPPKPPLFSERLSELER 213

  Fly   215 -SKTMLSLLGQQQQFHFAFGQRPFHFS-------TDPLSGFRMPPIGNCQSASNTHWGYGSAASA 271
             .:|.:.:..|.|....:....|..|:       :||......||           |.|   ...
Zfish   214 LRQTTMRVAVQTQSPRPSLNATPNSFNPQGQTQISDPRQAQSSPP-----------WSY---EQP 264

  Fly   272 YSPYLA---SSGLSSCTTPTSAQFNNPALGFTCSSNDQSNNQDFGGATNRDCVPMLPD-----ST 328
            |.|||:   |..:.| |||.|                         :|....:|.:.|     |.
Zfish   265 YPPYLSQMTSPSIHS-TTPLS-------------------------STRATGLPTISDVPRRLSG 303

  Fly   329 ASDLD-------------QHLSSLVGSTSGQMTHHSLLGAGGQTSISSTVNGASGGGSAGAGTAG 380
            .|:|.             ..||||..|.......|.      ..:.:.|....:.|.|.|..|  
Zfish   304 TSELSPFSADPRQFERQFPSLSSLTDSRFPSPRMHY------PATFTYTPTPVTSGMSLGMST-- 360

  Fly   381 GGAGSGGGAGGGAGGNSILVPRYHTNASNEY-NVHSSQNGPRSLSDS------------------ 426
                               ...|||.....| ....:|:||...|.:                  
Zfish   361 -------------------TTHYHTYLPPPYPGSTQNQSGPFQTSSTPYLYYGASSGSYQFPMVP 406

  Fly   427 --SQAESPVQEDLLTTNT------PNLGSTAGGGAANGGAGSN 461
              .::.|.:.....:.:|      |||.:...||.|:|...|:
Zfish   407 GGDRSPSRMLPPCTSASTGSTLINPNLPNQTDGGEADGSHSSS 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RunxANP_001259747.1 Runt 95..216 CDD:279225 98/145 (68%)
runx2aNP_998023.1 Runt 70..191 CDD:279225 98/120 (82%)
RunxI 376..467 CDD:285676 14/74 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 211 1.000 Domainoid score I2735
eggNOG 1 0.900 - - E1_KOG3982
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000993
OrthoInspector 1 1.000 - - mtm6398
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11950
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X738
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
76.960

Return to query results.
Submit another query.