DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl1 and Marco

DIOPT Version :10

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001102481.1 Gene:Marco / 367391 RGDID:1589662 Length:519 Species:Rattus norvegicus


Alignment Length:122 Identity:40/122 - (32%)
Similarity:53/122 - (43%) Gaps:18/122 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QGWANLNVQNNYRNMMVRLATNKAALAGIQVLREGRVEVSFDFGASWGTICSTSWSMREANVVCR 81
            ||......|....|::||:....:         .||.||.::  ..|||||...|...:|.|.||
  Rat   408 QGQKGEKGQKGDFNLVVRIVGGTS---------RGRAEVYYN--NVWGTICDDGWDNNDATVFCR 461

  Fly    82 QLGLGYASKASQGTEHGDSRKYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHN 138
            .  |||:|....|:..|.:.|. | :....|.|||..|.||.:.|...:.|   |||
  Rat   462 M--LGYSSGRGLGSFGGGTGKI-W-LDDVSCLGTEATLWDCRKSSWGSHNC---NHN 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SR 50..136 CDD:214555 31/85 (36%)
Lysyl_oxidase 149..351 CDD:460102
MarcoNP_001102481.1 Collagen 150..199 CDD:460189
gly_rich_SclB <178..>418 CDD:468478 3/9 (33%)
SR 424..518 CDD:214555 36/106 (34%)
Blue background indicates that the domain is not in the aligned region.

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